High scoring segment selection for pairwise whole genome sequence alignment with the maximum scoring subsequence and GPUs

2020 ◽  
Vol 13 (1) ◽  
pp. 71
Author(s):  
Abdulrhman Aljouie ◽  
Ling Zhong ◽  
Usman Roshan
Keyword(s):  
Genome Sequence ◽  
Sequence Alignment ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Selection For

Whole genome sequence analysis to detect signatures of positive selection for high fecundity in sheep

2018 ◽  
Vol 54 (2) ◽  
pp. 358-364 ◽  
Author(s):  
Maryam Nosrati ◽  
Hojjat Asadollahpour Nanaei ◽  
Zeinab Amiri Ghanatsaman ◽  
Ali Esmailizadeh
Keyword(s):  
Sequence Analysis ◽  
Positive Selection ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
High Fecundity ◽  
Genome Sequence Analysis ◽  
Selection For

scholarly journals Isolation and characterisation of porcine epidemic diarrhoea virus in Hungary – Short communication

2019 ◽  
Vol 67 (2) ◽  
pp. 307-313 ◽  
Author(s):  
Anna Valkó ◽  
Ervin Albert ◽  
Attila Cságola ◽  
Tünde Varga ◽  
Krisztián Kiss ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Sequence Alignment ◽  
Short Communication ◽  
Whole Genome Sequence ◽  
Economic Losses ◽  
Whole Genome ◽  
S Gene ◽  
Porcine Epidemic Diarrhoea Virus ◽  
Diarrhoea Virus

Porcine epidemic diarrhoea virus (PEDV) is an emerging enteropathogen, causing great economic losses in the pig industry. After many years of quiescence, PEDV was detected in Hungary in 2016 with a recombination in its S gene. In order to determine the extent of this change, an attempt was made to isolate the recombinant PEDV. This study was extended with a variety of samples collected from three separate farms with newly identified PEDV in 2018. The recombinant PEDV from 2016 was isolated successfully along with three viruses from 2018, and one isolate from the new cases was used for whole genome determination. Whole genome sequence alignment revealed the highest identity with recombinant Hungarian and Slovenian PEDV within the low-pathogenic European viruses. This suggests that these recombinant PEDV are circulating in this area and may spread to other parts of the continent.

Whole-Genome Sequence Characterization of Primary Auxin-Responsive Aux/IAA Gene Family in Sorghum (Sorghum bicolor L.)

2010 ◽  
Vol 36 (4) ◽  
pp. 688-694
Author(s):  
Yi-Jun WANG ◽  
Yan-Ping LÜ ◽  
Qin XIE ◽  
De-Xiang DENG ◽  
Yun-Long BIAN
Keyword(s):  
Sorghum Bicolor ◽  
Gene Family ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Sequence Characterization ◽  
I Gene

Whole-Genome Sequence Isolation, Chromosome Location, and Characteriza-tion of Primary Auxin-ResponsiveAux/IAAGene Family inAegilops tauschii

2014 ◽  
Vol 40 (12) ◽  
pp. 2059
Author(s):  
Lin-Yi QIAO ◽  
Xin LI ◽  
Zhi-Jian CHANG ◽  
Xiao-Jun ZHANG ◽  
Hai-Xian ZHAN ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Chromosome Location
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