A LINEAR SOLUTION FOR HAPLOTYPE PERFECT PHYLOGENY PROBLEM (EXTENDED ABSTRACT)

Author(s):  
YUNKAI LIU ◽  
CUN-QUAN ZHANG
Author(s):  
Habib Ramezannejad Azarboni ◽  
Abolfazl Darvizeh

The effect of strain rate on the cavitation time and elastoplastic deformation of steel rectangular plate subjected to underwater explosion load is analytically and numerically investigated in this study. At the cavitation time, the total pressure of the explosion is eliminated so that the cavitation time plays a significant role in the elastoplastic deformation of underwater explosive forming of plate. Taking into account the strain rate effect, the Cowper-Symond constitutive equation of mild steel is employed. Exact linear solution using the Eigen function and numerical linear and nonlinear solution using finite difference method (FDM) of dynamic response of impulsively plate is obtained. Implementing the linear work hardening, the stress, strain, displacement, and velocity in any steps of loading are calculated. The time of cavitation can be recognized in elastic or plastic regimes by applying the Cowper-Symond constitutive equation. Considering the strain rate influence, the effects of charge mass and standoff are investigated to occur of cavitation and time dependent deflection and velocity of a rectangular plate.


2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Charith B. Karunarathna ◽  
Jinko Graham

Abstract Background A perfect phylogeny is a rooted binary tree that recursively partitions sequences. The nested partitions of a perfect phylogeny provide insight into the pattern of ancestry of genetic sequence data. For example, sequences may cluster together in a partition indicating that they arise from a common ancestral haplotype. Results We present an R package to reconstruct the local perfect phylogenies underlying a sample of binary sequences. The package enables users to associate the reconstructed partitions with a user-defined partition. We describe and demonstrate the major functionality of the package. Conclusion The package should be of use to researchers seeking insight into the ancestral structure of their sequence data. The reconstructed partitions have many applications, including the mapping of trait-influencing variants.


2014 ◽  
Vol 31 (2) ◽  
pp. 129-143
Author(s):  
Alexey Zhirabok ◽  
Alexey Shumsky ◽  
Yevgeny Bobko

Purpose – The purpose of this study is to investigate the problem of fault accommodation in bilinear dynamic systems. Design/methodology/approach – Solution to this problem is related to constructing the control law which provides full decoupling with respect to the fault effects. The so-called logic-dynamic approach will be used to solve this problem. The main steps of this approach are: replacing the initial bilinear system by certain linear one, solving the problem under consideration for this linear system by well-known linear methods with some restrictions, taking into account the bilinear term to correct the obtained linear solution. Findings – Existing conditions of the fault accommodation problem in a form of rank equalities and inequalities are formulated. Calculating relations for the control law and the auxiliary systems are given. Practical implications – The suggested method allows determining such a control law that preserves the main performances of the system in the faulty case, while the minor performances may degrade. Originality/value – The main advantage of the logic-dynamic approach is a possibility to solve the problem of fault accommodation for nonlinear systems by linear methods without decreasing the main properties of the obtained solution.


2000 ◽  
Vol 122 (4) ◽  
pp. 450-459 ◽  
Author(s):  
C. W. Wang ◽  
L. Berhan ◽  
A. M. Sastry

Applications for porous fibrous materials range from electrochemical substrates to web reinforcement in polymeric composite materials. The details of local load transfer are studied in a class of cost-effective, stochastic fibrous networks used in battery applications, which form the substrate for a composite electrode. The connectivity of these materials is quantitatively related to modulus and strength, and detailed results of different simulations approaches in approximating material construction are discussed. In Part I, we discuss microscale assumptions, including beam type, nodal connections and equivalence of models to more physically realistic models. Simulation of large networks is computationally intensive, and show low-strain, nonlinear behavior even when comprised of elastic elements when failure criteria (here, strength-of-materials) are applied to produce sequential rupture of beams and nodes. Strategies for effective simulation of these materials requires detailed analysis of the simplest assumptions which can be made at the microscale which produce acceptably realistic response. We show that simple Euler-Bernoulli beam elements can be used to effectively model such materials, even when segment lengths in a network are very small. Moreover, connections comprised of simple torsion springs produce realistic behavior, and can mimic more realistic junctures by adaptation of the linear solution to a compliant zone model. In Part II of this work, we demonstrate the effect of model selection on full network behavior, and also discuss issues of connectivity at the scale of the porous material rather than element-by-element. This work points toward use of simple constructions to model complex behavior, and may ultimately provide insight into modeling of a large class of porous materials. [S0094-4289(00)01704-7]


2017 ◽  
Vol 14 (2) ◽  
pp. 145-154 ◽  
Author(s):  
Onur Arslan

Purpose Frictional sliding contact problems between laterally graded orthotropic half-planes and a flat rigid stamp are investigated. The presented study aims at guiding engineering applications in the prediction of the contact response of orthotropic laterally graded members. Design/methodology/approach The solution procedure is based on a finite element (FE) approach which is conducted with an efficient FE analysis software ANSYS. The spatial gradations of the orthotropic stiffness constants through the horizontal axis are enabled utilizing the homogeneous FE approach. The Augmented Lagrangian contact algorithm is used as an iterative non-linear solution method in the contact analysis. Findings The accuracy of the proposed FE solution method is approved by using the comparisons of the results with those computed using an analytical technique. The prominent results indicate that the surface contact stresses can be mitigated upon increasing the degree of orthotropy and positive lateral gradations. Originality/value One can infer from the literature survey that, the contact mechanics analysis of orthotropic laterally graded materials has not been investigated so far. In this study, an FE method-based computational solution procedure for the aforementioned problem is addressed. The presented study aims at guiding engineering applications in the prediction of the contact response of orthotropic laterally graded members. Additionally, this study provides some useful points related to computational contact mechanics analysis of orthotropic structures.


Author(s):  
Jean Franc¸ois Sigrist ◽  
Christian Laine ◽  
Dominique Lemoine ◽  
Bernard Peseux

This paper is related to the study of a nuclear propulsion reactor prototype for the French Navy. This prototype is built on ground and is to be dimensioned toward seismic loading. The dynamic analysis takes the coupled fluid structure analysis into account. The basic fluid models used by design engineers are inviscid incompressible or compressible. The fluid can be described in a bidimensional by slice or a three-dimensional approach. A numerical study is carried out on a generic problem for the linear FSI dynamic problem. The results of this study are presented and discussed. As a conclusion, the three-dimensional inviscid incompressible fluid appears to be the best compromise between the description of physical phenomena and the cost of modeling. The geometry of the reactor is such that large displacements of the structure in the fluid can occur. Therefore, the linearity hypothesis might not be longer valid. The case of large amplitude imposed oscillating motion of a cylinder in a confined fluid is numerically studied. A CFD code is used to investigate the fluid behavior solving the NAVIER-STOKES equations. The forces induced on the cylinder by the fluid are computed and compared to the linear solution. The limit of the linear model can then be exhibited.


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