scholarly journals Computational phenotype prediction of ionizing-radiation-resistant bacteria with a multiple-instance learning model

Author(s):  
Sabeur Aridhi ◽  
Mondher Maddouri ◽  
Haitham Sghaier ◽  
Engelbert Mephu Nguifo
2013 ◽  
Vol 55 (1) ◽  
pp. 135-140 ◽  
Author(s):  
Li Zhi-Han Yu ◽  
Xue-Song Luo ◽  
Ming Liu ◽  
Qiaoyun Huang

2005 ◽  
Vol 71 (9) ◽  
pp. 5225-5235 ◽  
Author(s):  
Fred A. Rainey ◽  
Keren Ray ◽  
Margarida Ferreira ◽  
Bridget Z. Gatz ◽  
M. Fernanda Nobre ◽  
...  

ABSTRACT The ionizing-radiation-resistant fractions of two soil bacterial communities were investigated by exposing an arid soil from the Sonoran Desert and a nonarid soil from a Louisiana forest to various doses of ionizing radiation using a 60Co source. The numbers of surviving bacteria decreased as the dose of gamma radiation to which the soils were exposed increased. Bacterial isolates surviving doses of 30 kGy were recovered from the Sonoran Desert soil, while no isolates were recovered from the nonarid forest soil after exposure to doses greater than 13 kGy. The phylogenetic diversities of the surviving culturable bacteria were compared for the two soils using 16S rRNA gene sequence analysis. In addition to a bacterial population that was more resistant to higher doses of ionizing radiation, the diversity of the isolates was greater in the arid soil. The taxonomic diversity of the isolates recovered was found to decrease as the level of ionizing-radiation exposure increased. Bacterial isolates of the genera Deinococcus, Geodermatophilus, and Hymenobacter were still recovered from the arid soil after exposure to doses of 17 to 30 kGy. The recovery of large numbers of extremely ionizing-radiation-resistant bacteria from an arid soil and not from a nonarid soil provides further ecological support for the hypothesis that the ionizing-radiation resistance phenotype is a consequence of the evolution of other DNA repair systems that protect cells against commonly encountered environmental stressors, such as desiccation. The diverse group of bacterial strains isolated from the arid soil sample included 60 Deinococcus strains, the characterization of which revealed nine novel species of this genus.


BMC Genomics ◽  
2008 ◽  
Vol 9 (1) ◽  
pp. 297 ◽  
Author(s):  
Haïtham Sghaier ◽  
Kaïs Ghedira ◽  
Alia Benkahla ◽  
Insaf Barkallah

2016 ◽  
Vol 23 (1) ◽  
pp. 10-20 ◽  
Author(s):  
Sabeur Aridhi ◽  
Haïtham Sghaier ◽  
Manel Zoghlami ◽  
Mondher Maddouri ◽  
Engelbert Mephu Nguifo

Author(s):  
Yuna Park ◽  
Soohyun Maeng ◽  
Tuvshinzaya Damdintogtokh ◽  
Jing Zhang ◽  
Min-Kyu Kim ◽  
...  

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