BatScope is a free application for processing acoustic high-frequency recordings of bats. It can import data, including meta-data information, from recorders such as Batlogger. The resulting content can be filtered visually as spectrograms or according to data fields and can be displayed. Automated processing includes detecting and extracting of echolocation calls, filtering noise, and measuring statistical parameters. Calls are classified to species by statistically matching to a reference database. A weighted list of classifiers helps to assign the most likely species per call. Classifiers were trained on 19 636 echolocation calls of 27 European bat species. When classifiers all agree on a species (76.4% of all cases), the mean correct classification rate reaches 95.7%. A sequence’s summary statistic indicates the most likely species occurring therein. Classifications can be verified visually, by filtering, and by acoustic comparison with reference calls. Procedures are available for, e.g., excluding dubious cutouts from the statistics and for accepting or overriding the proposed species assignment. Acoustic recordings can be exported and exchanged with other users. Finally, the verified results can be exported to spreadsheets for further analyses and reporting. We currently reprogram BatScope using Java, PostgreSQL, and R to reach a unified and portable software architecture.
Alview: Portable Software for Viewing Sequence Reads in BAM Formatted Files
