EXPRESS: A Piecewise Model for In Situ Raman Measurement of the Chlorinity of Deep-Sea High-Temperature Hydrothermal Fluids

2021 ◽  
pp. 000370282199911
Author(s):  
meng ge ◽  
Lianfu Li ◽  
Xin Zhang ◽  
Zhendong Luan ◽  
Zengfeng Du ◽  
...  
Keyword(s):  
High Temperature ◽  
Deep Sea ◽  
Okinawa Trough ◽  
Peak Position ◽  
Hydrothermal Fluids ◽  
Calibration Model ◽  
The Okinawa Trough ◽  
Temperature Ranges ◽  
Piecewise Model ◽  
C 50

The chlorinity of deep-sea hydrothermal fluids, representing one of the crucial deep-sea hydrothermal indicators, indicates the degree of deep phase separation of hydrothermal fluids and water/rock reactions. However, accurately measuring the chlorinity of high-temperature hydrothermal fluids is still a significant challenge. In this paper, a piecewise chlorinity model to measure the chlorinity of high-temperature hydrothermal fluids was developed based on the OH stretching band of water, exhibiting an accuracy of 96.20%. The peak position, peak area ratio and F value were selected to establish the chlorinity piecewise calibration model within the temperature ranges of 0-50°C, 50-200°C and 200-300°C. Compared with that of the chlorinity calibration model built based on a single parameter, the accuracy of this piecewise model increased by approximately 4.83-12.33%. This chlorinity calibration model was applied to determine the concentrations of Cl for high-temperature hydrothermal fluids in the Okinawa Trough hydrothermal field.

scholarly journals Population connectivity of the crab Gandalfus yunohana (Takeda, Hashimoto & Ohta, 2000) (Decapoda: Brachyura: Bythograeidae) from deep-sea hydrothermal vents in the northwestern Pacific

2020 ◽  
Vol 40 (5) ◽  
pp. 556-562
Author(s):  
Hiromi K Watanabe ◽  
Chong Chen ◽  
Shigeaki Kojima ◽  
Shogo Kato ◽  
Hiroyuki Yamamoto
Keyword(s):  
Deep Sea ◽  
Hydrothermal Vents ◽  
Okinawa Trough ◽  
Coi Gene ◽  
Genetic Connectivity ◽  
Reverse Direction ◽  
Northwestern Pacific ◽  
Brachyuran Crab ◽  
The Okinawa Trough ◽  
Mariana Arc

Abstract Genetic connectivity provides a basis for evaluating the resilience of animal communities by elucidating gene flow and serves as a proxy for realized dispersal through planktonic larval dispersal, settlement, and reproductive success. Gandalfus yunohana (Takeda, Hashimoto & Ohta, 2000) is a brachyuran crab endemic to deep-sea hydrothermal vents in the northwestern Pacific. Although an iconic and often dominant species, the connectivity among its populations is yet to be examined. We obtained barcoding sequences of the mitochondrial COI gene of G. yunohana from four vent fields including two on the Izu Arc, one on the northern Mariana Arc, and one in the Okinawa Trough. Genetic diversity of populations on the Izu and northern Mariana arcs were similar and shared the dominant haplotypes, showing no genetic subdivision regardless of the habitat depth. The Okinawa Trough population, for which only one specimen was available, was not genetically different from specimens from the Izu/Mariana arc populations. Estimation of the number of immigrants among populations suggests that the migration from north to south is higher than in the reverse direction. Our results resonate with previous laboratory-culture experiments, suggesting a high dispersal capability for G. yunohana. Visual observations and sampling, however, suggest that G. yunohana is exceedingly rare in the Okinawa Trough. This perhaps results from a lack of sufficient larval supply from the Izu-Bonin-Mariana Arc vents, and there may not be a reproductive population in the Okinawa Trough.

New ways for research and development using a deep-sea hydrothermal vent system in the Okinawa Trough

2015 ◽  
Author(s):  
Tomokazu Saruhashi ◽  
Masanori Kyo ◽  
Ikuo Sawada ◽  
Takahiro Yokoyama ◽  
Noriaki Sakurai ◽  
...  
Keyword(s):  
Research And Development ◽  
Deep Sea ◽  
Hydrothermal Vent ◽  
Okinawa Trough ◽  
The Okinawa Trough

scholarly journals Draft Genome Sequence of Exiguobacterium sp. HVEsp1, a Thermophilic Bacterium Isolated from a Deep-Sea Hydrothermal Vent in the Okinawa Trough

2017 ◽  
Vol 5 (17) ◽  
Author(s):  
Chen Chen ◽  
Li Sun
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Hydrothermal Vent ◽  
Hydrothermal Vents ◽  
Sequence Data ◽  
Okinawa Trough ◽  
Draft Genome ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
The Okinawa Trough

ABSTRACT We report here the draft genome sequence of Exiguobacterium sp. HVEsp1, a thermophilic bacterium isolated from a deep-sea hydrothermal vent. The estimated genome size of this strain is 2,838,499 bp with a G+C content of 48.2%. The genome sequence data provide valuable information that will facilitate studies on the adaptation mechanisms of bacteria living in deep-sea hydrothermal vents.

scholarly journals Combining Multiple Markers in Environmental DNA Metabarcoding to Assess Deep-Sea Benthic Biodiversity

2021 ◽  
Vol 8 ◽  
Author(s):  
Jun Liu ◽  
Haibin Zhang
Keyword(s):  
Deep Sea ◽  
Okinawa Trough ◽  
Environmental Dna ◽  
Rrna Gene ◽  
28S Rrna ◽  
Eukaryotic Diversity ◽  
The Okinawa Trough ◽  
Marine Diversity ◽  
Deep Sea Sediments ◽  
Reference Databases

Environmental DNA (eDNA) metabarcoding is an emerging tool to estimate diversity by combining DNA from the environmental samples and the high-throughput sequencing. Despite its wide use in estimating eukaryotic diversity, many factors may bias the results. Maker choice and reference databases are among the key issues in metabarcoding analyses. In the present study, we compared the performance of a novel 28S rRNA gene marker designed in this study and two commonly used 18S rRNA gene markers (V1-2 and V9) in estimating the eukaryotic diversity in the deep-sea sediments. The metabarcoding analyses based on the sediment surveys of the Okinawa Trough found that more eukaryotic taxa were discovered by 18S V9 than 28S and 18S V1-2, and that 18S V9 also performed better in metazoan recovery than the other two markers. Although a broad range of taxa were detected by the three metabarcoding markers, only a small proportion of taxa were shared between them even at the phylum level. The non-metric multidimensional scaling (NMDS) analysis also supported that communities detected by the three markers were distinct from each other. In addition, different communities were resolved by different reference databases (NCBI nt vs. SILVA) for the two 18S markers. Combining the three markers, annelids were found to be the most abundant (44.9%) and diverse [179 operational taxonomic units (OTUs)] metazoan group in the sediments of the Okinawa Trough. Therefore, multiple independent markers are recommended to be used in metabarcoding analyses during marine diversity surveys, especially for the poorly understood deep-sea sediments.

scholarly journals Draft Genome Sequence of Pseudomonas oceani DSM 100277T, a Deep-Sea Bacterium

2018 ◽  
Vol 6 (15) ◽  
pp. e00254-18 ◽  
Author(s):  
Elena García-Valdés ◽  
Margarita Gomila ◽  
Magdalena Mulet ◽  
Jorge Lalucat
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Okinawa Trough ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Deep Seawater ◽  
Coding Sequences ◽  
Content Type ◽  
The Okinawa Trough

ABSTRACT Pseudomonas oceani DSM 100277T was isolated from deep seawater in the Okinawa Trough at 1390 m. P. oceani belongs to the Pseudomonas pertucinogena group. Here, we report the draft genome sequence of P. oceani, which has an estimated size of 4.1 Mb and exhibits 3,790 coding sequences, with a G+C content of 59.94 mol%.

scholarly journals Predicting the local-scale spatial distribution of five megafaunal species associated with a deep-sea hydrothermal field in the Okinawa Trough, Japan

2019 ◽  
Vol 14 (3) ◽  
pp. 150-160 ◽  
Author(s):  
Seiji Takeuchi ◽  
Ryota Nakajima ◽  
Takehisa Yamakita ◽  
Roxana Hoque ◽  
Tetsuya Miwa ◽  
...  
Keyword(s):  
Spatial Distribution ◽  
Deep Sea ◽  
Okinawa Trough ◽  
Local Scale ◽  
Hydrothermal Field ◽  
The Okinawa Trough

A New Approach to Measuring the Temperature of Fluids Reaching 300 ℃ and 2 mol/kg NaCl Based on the Raman Shift of Water

2018 ◽  
Vol 72 (11) ◽  
pp. 1621-1631 ◽  
Author(s):  
Lianfu Li ◽  
Xin Zhang ◽  
Zhendong Luan ◽  
Zengfeng Du ◽  
Shichuan Xi ◽  
...  
Keyword(s):  
Okinawa Trough ◽  
Hydrothermal Fluids ◽  
Raman Shift ◽  
Ambient Seawater ◽  
The Okinawa Trough ◽  
Calibration Models ◽  
The Difference ◽  
Increasing Temperature ◽  
The Relationship

The OH stretching band of water is very sensitive to temperature and salinity for the existence of hydrogen bonds between H2O molecules. In this study, the OH stretching band was deconvoluted into two Gaussian peaks, with peak 1 at approximately 3450 cm−1 and peak 2 at approximately 3200 cm−1. The positions of peaks 1 and 2 both shifted to higher wavenumbers with increasing temperature from 50 ℃ to 300 ℃. The effects of salinity in the range of 0–2 mol/kg NaCl on the OH stretching band were also studied. Linearity for the relationship between Raman shift of peak 1 and temperature increased as the salt concentration increased from 0 to 2 mol/kg, while peak 2 displayed an opposing trend. Two temperature calibration models were developed based on the temperature-dependent changes in the Raman frequency shifts of peaks 1 and 2 (precision of 0.9 ℃ and 1.0 ℃, respectively). The calibration models for temperature were successfully applied to determining the temperatures of deep-sea hydrothermal fluids in the Okinawa Trough hydrothermal field. The degree of mixing of hydrothermal fluids and ambient seawater during in situ Raman measurements was estimated by the difference in temperatures determined through these calibration models and those measured through thermocouple sensors.

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