scholarly journals Draft Genome Sequence of Pseudomonas oceani DSM 100277T, a Deep-Sea Bacterium

2018 ◽  
Vol 6 (15) ◽  
pp. e00254-18 ◽  
Author(s):  
Elena García-Valdés ◽  
Margarita Gomila ◽  
Magdalena Mulet ◽  
Jorge Lalucat
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Okinawa Trough ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Deep Seawater ◽  
Coding Sequences ◽  
Content Type ◽  
The Okinawa Trough

ABSTRACT Pseudomonas oceani DSM 100277T was isolated from deep seawater in the Okinawa Trough at 1390 m. P. oceani belongs to the Pseudomonas pertucinogena group. Here, we report the draft genome sequence of P. oceani, which has an estimated size of 4.1 Mb and exhibits 3,790 coding sequences, with a G+C content of 59.94 mol%.

scholarly journals Draft Genome Sequence of the Arsenic-Resistant Bacterium Brevundimonas denitrificans TAR-002T

2017 ◽  
Vol 5 (47) ◽  
Author(s):  
Taishi Tsubouchi ◽  
Yukihiro Kaneko
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Draft Genome ◽  
Resistant Bacterium ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Sea Floor

ABSTRACT We report the 3.2-Mb draft genome sequence of Brevundimonas denitrificans strain TAR-002T, isolated from deep-sea floor sediment. The draft genome sequence of strain TAR-002T consists of 3,231,216 bp in 44 contigs, with a G+C content of 68.47%, 3,866 potential coding sequences (CDSs), 3 rRNAs, and 45 tRNAs.

scholarly journals Draft Genome Sequence of Exiguobacterium sp. HVEsp1, a Thermophilic Bacterium Isolated from a Deep-Sea Hydrothermal Vent in the Okinawa Trough

2017 ◽  
Vol 5 (17) ◽  
Author(s):  
Chen Chen ◽  
Li Sun
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Hydrothermal Vent ◽  
Hydrothermal Vents ◽  
Sequence Data ◽  
Okinawa Trough ◽  
Draft Genome ◽  
Thermophilic Bacterium ◽  
Draft Genome Sequence ◽  
The Okinawa Trough

ABSTRACT We report here the draft genome sequence of Exiguobacterium sp. HVEsp1, a thermophilic bacterium isolated from a deep-sea hydrothermal vent. The estimated genome size of this strain is 2,838,499 bp with a G+C content of 48.2%. The genome sequence data provide valuable information that will facilitate studies on the adaptation mechanisms of bacteria living in deep-sea hydrothermal vents.

scholarly journals Draft Genome Sequence of Mariprofundus micogutta Strain ET2

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Hiroko Makita ◽  
Shinro Nishi ◽  
Yoshihiro Takaki ◽  
Emiko Tanaka ◽  
Takuro Nunoura ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Deep Sea ◽  
Draft Genome ◽  
Hydrothermal Field ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type

ABSTRACT Mariprofundus micogutta strain ET2 was isolated in 2014 from a deep-sea hydrothermal field on the Bayonnaise Knoll of the Izu-Ogasawara arc. Here, we report its draft genome, which comprises 2,497,805 bp and contains 2,417 predicted coding sequences.

scholarly journals Draft Genome Sequence of Urease-Producing Pseudorhodobacter sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea

2019 ◽  
Vol 8 (23) ◽  
Author(s):  
Si Chul Kim ◽  
Hyo Jung Lee
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Yellow Sea ◽  
Draft Genome ◽  
The Yellow Sea ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Gram Negative ◽  
Content Type

Here, we report the draft genome sequence of Pseudorhodobacter sp. strain E13, a Gram-negative, aerobic, nonflagellated, and rod-shaped bacterium which was isolated from the Yellow Sea in South Korea. The assembled genome sequence is 3,878,578 bp long with 3,646 protein-coding sequences in 159 contigs.

scholarly journals Draft Genome Sequence of Enterococcus faecalis DD14, a Bacteriocinogenic Lactic Acid Bacterium with Anti-Clostridium Activity

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Yanath Belguesmia ◽  
Valérie Leclère ◽  
Matthieu Duban ◽  
Eric Auclair ◽  
Djamel Drider
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Enterococcus Faecalis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Gram Positive Bacteria ◽  
Healthy Newborn

ABSTRACT We report the draft genome sequence of Enterococcus faecalis DD14, a strain isolated from meconium of a healthy newborn at Roubaix Hospital (France). The strain displayed antagonism against a set of Gram-positive bacteria through concomitant production of lactic acid and bacteriocin. The genome has a size of 2,893,365 bp and a 37.3% G+C ratio and is predicted to contain at least 2,755 coding sequences and 62 RNAs.

scholarly journals Draft Genome Sequence of Freshwater-Derived Streptomyces sp. Strain BPSDS2, Isolated from Damte Stream, Northeast India

2019 ◽  
Vol 8 (43) ◽  
Author(s):  
Zothanpuia ◽  
Ajit Kumar Passari ◽  
Purbajyoti Deka ◽  
Vinay Rajput ◽  
Lakshmi P. M. Priya ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Northeast India ◽  
Draft Genome Sequence ◽  
Freshwater Sediments ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Streptomyces Sp

We report the draft genome sequence of Streptomyces sp. strain BPSDS2, isolated from freshwater sediments in Northeast India. The draft genome has a size of 8.27 Mb and 7,559 protein-coding sequences.

scholarly journals Draft Genome Sequence of Limisphaera ngatamarikiensis NGM72.4T, a Moderately Alkaliphilic Thermophile Belonging to the Class Verrucomicrobiae

2020 ◽  
Vol 9 (18) ◽  
Author(s):  
Carlo R. Carere ◽  
Jason A. Steen ◽  
Philip Hugenholtz ◽  
Matthew B. Stott
Keyword(s):  
New Zealand ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Illumina Hiseq ◽  
Coding Sequences ◽  
Content Type ◽  
Aotearoa New Zealand

Limisphaera ngatamarikiensis NGM72.4T is a thermophilic representative of the class Verrucomicrobiae. Isolated from geothermally heated subaqueous clay sediments from a Ngatamariki hotspring in Aotearoa New Zealand, the 3,908,748-bp genome was sequenced using the Illumina HiSeq 2500 platform. Annotation revealed 3,083 coding sequences, including 3,031 proteins, 3 rRNA genes, and 46 tRNA genes.

scholarly journals Draft Genome Sequence of the Lactococcus lactis 11/19-B1 Strain, Isolated from Kiwifruit

2020 ◽  
Vol 9 (36) ◽  
Author(s):  
Ken Ishioka ◽  
Kyoko Nishiyama ◽  
Tatsuo Suzutani
Keyword(s):  
Lactococcus Lactis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Homology Search ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type

ABSTRACT We report here the draft genome sequence of Lactococcus lactis strain 11/19-B1, isolated from kiwifruit. The 11/19-B1 strain possesses one chromosome and five plasmids and has a predicted 2,429 protein-coding sequences. DFAST annotation and a BLASTp homology search estimated that 11/19-B1 possesses three bacteriocin immunity proteins and four bacteriocin proteins.

scholarly journals Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots

2020 ◽  
Vol 9 (12) ◽  
Author(s):  
Dale A. Pelletier ◽  
Leah H. Burdick ◽  
Mircea Podar ◽  
Christopher W. Schadt ◽  
Udaya C. Kalluri
Keyword(s):  
Genome Sequence ◽  
Populus Deltoides ◽  
Heterotrophic Bacterium ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Trna Genes ◽  
Coding Sequences ◽  
Content Type ◽  
Eastern Cottonwood

Larkinella sp. strain BK230, a heterotrophic bacterium of the phylum Bacteroidetes, was isolated from the roots of a field-grown eastern cottonwood tree (Populus deltoides) located in Georgia. The draft 7.27-Mb genome has a G+C content of 53.4% and contains 6,026 coding sequences, including 41 tRNA genes.

scholarly journals Draft Genome Sequence of Pannonibacter indicus Strain HT23T (DSM 23407T), a Highly Arsenate-Tolerant Bacterium Isolated from a Hot Spring in India

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Saumya Bandyopadhyay ◽  
William B. Whitman ◽  
Subrata K. Das
Keyword(s):  
Genome Sequence ◽  
Hot Spring ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Arsenate Resistance

ABSTRACT Pannonibacter indicus strain HT23T, a highly arsenate-tolerant bacterium, was isolated from a tropical hot spring. The estimated genome is 4.2 Mb with 3,818 protein-coding sequences containing putative genes, some of which are involved in arsenate resistance.

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