Microbiome Development of Seawater-Incubated Pre-production Plastic Pellets Reveals Distinct and Predictive Community Compositions

Plastics of various chemistries pollute global water bodies. Toxic chemicals leach with detrimental and often unpredictable impacts on the surrounding ecosystems. We found that seawater leachates of plastic pre-production pellets from 7 recycle categories are acutely toxic to stage II barnacle nauplii; lethal concentration 50 (LC50s) were observed in 24-h leachates from dilutions ranging from 0.007 to 2.1 mg/mL of seawater. Based on previous observations that macro-organismal settlement on fouling management coatings of various toxicities can be used to predict the toxicity of the coating, we hypothesized that interaction of plastic pre-production pellets with emerging microbiomes would exhibit patterns indicative of the chemistry at the pellet surface. We used amplicon sequencing of bacterial 16S ribosomal RNA genes to characterize the microbiomes that developed from 8 through 70 days on pellets exposed to the same flowing ambient seawater. Diversity and composition of the microbiomes colonizing plastic pellets changed over time and varied with plastic type. Microbial taxa belong to taxonomic groups known to consume hydrocarbons, to be prevalent following marine oil spills, or to live on fouling management surfaces. Microbiomes were still distinct between plastic types at Day 70, suggesting that differences in the physicochemical characteristics of the underlying plastics continue to exert variable selection of surface microbial communities. A random forest-based sample classifier correctly predicted 93% of plastic types using microbiome compositions. Surface microbiomes have promise for use in forensically identifying plastic types and potential toxicities.

Complex Biomineralization Pathways of the Belemnite Rostrum Cause Biased Paleotemperature Estimates

Paleotemperatures based on δ18O values derived from belemnites are usually “too cold” compared to other archives and paleoclimate models. This temperature bias represents a significant obstacle in paleoceanographic research. Here we show geochemical evidence that belemnite calcite fibers are composed of two distinct low-Mg calcite phases (CP1, CP2). Phase-specific in situ measurement of δ18O values revealed a systematic offset of up to 2‰ (~8 °C), showing a lead–lag signal between both phases in analyses spaced less than 25 µm apart and a total fluctuation of 3.9‰ (~16 °C) within a 2 cm × 2 cm portion of a Megateuthis (Middle Jurassic) rostrum. We explain this geochemical offset and the lead–lag signal for both phases by the complex biomineralization of the belemnite rostrum. The biologically controlled formation of CP1 is approximating isotope fractionation conditions with ambient seawater to be used for temperature calculation. In contrast, CP2 indicates characteristic non-isotope equilibrium with ambient seawater due to its formation via an amorphous Ca-Mg carbonate precursor at high solid-to-liquid ratio, i.e., limited amounts of water were available during its transformation to calcite, thus suggesting lower formation temperatures. CP2 occludes syn vivo the primary pore space left after formation of CP1. Our findings support paleobiological interpretations of belemnites as shelf-dwelling, pelagic predators and call for a reassessment of paleoceanographic reconstructions based on belemnite stable isotope data.

Biogeochemical feedbacks to ocean acidification in a cohesive photosynthetic sediment

Ecosystem feedbacks in response to ocean acidification can amplify or diminish diel pH oscillations in productive coastal waters. Benthic microalgae generate such oscillations in sediment porewater and here we ask how CO2 enrichment (acidification) of the overlying seawater alters these in the absence and presence of biogenic calcite. We placed a 1-mm layer of ground oyster shells, mimicking the arrival of dead calcifying biota (+Calcite), or sand (Control) onto intact silt sediment cores, and then gradually increased the pCO2 in the seawater above half of +Calcite and Control cores from 472 to 1216 μatm (pH 8.0 to 7.6, CO2:HCO3− from 4.8 to 9.6 × 10−4). Porewater [O2] and [H+] microprofiles measured 16 d later showed that this enrichment had decreased the O2 penetration depth (O2-pd) in +Calcite and Control, indicating a metabolic response. In CO2-enriched seawater: (1) sediment biogeochemical processes respectively added and removed more H+ to and from the sediment porewater in darkness and light, than in ambient seawater increasing the amplitude of the diel porewater [H+] oscillations, and (2) in darkness, calcite dissolution in +Calcite sediment decreased the porewater [H+] below that in overlying seawater, reversing the sediment–seawater H+ flux and decreasing the amplitude of diel [H+] oscillations. This dissolution did not, however, counter the negative effect of CO2 enrichment on O2-pd. We now hypothesise that feedback to CO2 enrichment—an increase in the microbial reoxidation of reduced solutes with O2—decreased the sediment O2-pd and contributed to the enhanced porewater acidification.

One year in situ incubation of pyrite at the deep seafloor and its microbiological and biogeochemical characterizations

In this study, we performed a year-long in situ incubation experiment of a common ferrous sulfide (Fe-S) mineral, pyrite, at the oxidative deep seafloor in the hydrothermal vent field in the Izu-Bonin arc, Japan, and characterized its microbiological and biogeochemical properties to understand the microbial alteration processes of the pyrite, focusing on the Fe(II) oxidation. The microbial community analysis of the incubated pyrite showed that the domain Bacteria heavily dominated over Archaea compared with that of the ambient seawater, and Alphaproteobacteria and Gammaproteobacteria distinctively co-dominated at the class level. The mineralogical characterization by surface-sensitive Fe X-ray absorption near-edge structure (XANES) analysis revealed that specific Fe(III) hydroxides (schwertmannite and ferrihydrite) were locally formed at the pyrite surface as the pyrite alteration products. Based on the Fe(III) hydroxide species and proportion, we thermodynamically calculated the pH value at the pyrite surface to be pH 4.9-5.7, indicating that the acidic condition derived from pyrite alteration was locally formed at the surface against neutral ambient seawater. This acidic microenvironment at the pyrite surface might explain the distinct microbial communities found in our pyrite samples. Also, the acidity at the pyrite surface indicates that abiotic Fe(II) oxidation rate was much limited at the pyrite surface kinetically, 3.9 × 10 3 −1.6 × 10 5 -fold lower than that in the ambient seawater. Moreover, the nanoscale characterization of microbial biomolecules using carbon near-edge X-ray absorption fine structure (NEXAFS) analysis showed that the sessile cells attached to pyrite excreted the acidic polysaccharide-rich extracellular polymeric substances at the pyrite surface, which can lead to the promotion of biogenic Fe(II) oxidation and pyrite alteration. Importance Pyrite is one of the most common Fe-S minerals found in submarine hydrothermal environments. Previous studies demonstrated that the Fe-S mineral can be a suitable host for Fe(II)-oxidizing microbes in hydrothermal environments; however, the details of microbial Fe(II) oxidation processes with Fe-S mineral alteration are not well known. The spectroscopic and thermodynamic examination in the present study suggests that moderately acidic pH condition was locally formed at the pyrite surface during pyrite alteration at the seafloor due to proton releases with Fe(II) and sulfidic S oxidations. Following previous studies, the abiotic Fe(II) oxidation rate significantly decreases with a decrease in pH, but the biotic (microbial) Fe(II) oxidation rate is not sensitive to the pH decrease. Thus, our findings clearly suggest the pyrite surface is a unique microenvironment where abiotic Fe(II) oxidation is limited and biotic Fe(II) oxidation is more prominent than that in neutral ambient seawater.

Oxygen Isotope Equilibrium of the Shallow-Water Benthic Foraminifer Hanzawaia nipponica Asano in Tosa Bay, Southwest Japan

Oxygen isotopic compositions (δ18O) of benthic foraminifer tests are widely used for reconstructing paleoceanographic changes, such as global ice volumes during glacial–interglacial cycles. Although deep-sea benthic foraminifers have been well characterized and are considered reliable indicators, little attention has been paid to the geochemistry of shallow-water benthic foraminifers. In this study we evaluated δ18O in the shallow-water benthic foraminifer Hanzawaia nipponica Asano, which lives in surface sediments on continental shelves and upper slopes under the influence of two warm currents, the Kuroshio and Tsushima currents, in the East China Sea, northwest Pacific, and southwestern Japan Sea. To evaluate oxygen isotope equilibrium, we analyzed δ18O of H. nipponica and ambient seawater on the continental shelf in Tosa Bay, southwest Japan. Seawater δ18O and salinity in Tosa Bay are similar to those of surface and subsurface waters in the Kuroshio region in the Okinawa Trough and the northwest Pacific. Vertical profiles of seawater δ18O show no variation with water depth (0–200 m) in Tosa Bay. However, tests of living H. nipponica (as determined by staining with Rose Bengal) and fossil (non-stained) H. nipponica, picked from samples of the top centimeter of seafloor sediment, yielded carbonate δ18O values that clearly increase with water depth, suggesting a temperature-dependent relationship. A comparison of carbonate δ18O values in living H. nipponica and those predicted on the basis of seawater δ18O and annual mean bottom temperature shows that H. nipponica tests are in oxygen isotopic equilibrium with ambient seawater. We determined the linear equations of δ18O–temperature relationship, and the slope of −5.26 (0.19‰°C−1) for living and −4.50 (0.22‰°C−1) for the fossil H. nipponica, respectively. The carbon isotopic compositions (δ13C) of H. nipponica also closely match seawater δ13C. Thus, we propose that the carbonate δ18O and δ13C of H. nipponica are useful proxies to reconstruct shallow-water paleoenvironmental changes in the northwest Pacific and its marginal seas.

Bacterial Composition Associated With Giant Colonies of the Harmful Algal Species Phaeocystis globosa

The cosmopolitan algae Phaeocystis globosa forms harmful algal blooms frequently in a number of tropical and subtropical coastal regions in the past two decades. During the bloom, the giant colony, which is formed by P. globosa, is the dominant morphotype. However, the microenvironment and the microbial composition in the intracolonial fluid are poorly understood. Here, we used high-throughput 16S rRNA amplicon sequencing to examine the bacterial composition and predicted functions in intracolonial fluid. Compared with the bacterial consortia in ambient seawater, intracolonial fluids possessed the lower levels of microbial richness and diversity, implying selectivity of bacteria by the unique intracolonial microenvironment enclosed within the P. globosa polysaccharide envelope. The bacterial consortia in intracolonial fluid were dominated by Balneola (48.6% of total abundance) and Labrezia (28.5%). The bacteria and microbial function enriched in intracolonial fluid were involved in aromatic benzenoid compounds degradation, DMSP and DMS production and consumption, and antibacterial compounds synthesis. We suggest that the P. globosa colonial envelope allows for the formation of a specific microenvironment; thus, the unique microbial consortia inhabiting intracolonial fluid has close interaction with P. globosa cells, which may benefit colony development.

Paleoredox conditions, hydrothermal history, and target vectoring in the Macmillan Pass base-metal district, Yukon, Canada: 2 – Pyrite paragenesis and mineral chemistry

ABSTRACT The MacMillan Pass district in Yukon, Canada, hosts the Tom and Jason clastic sediment-hosted Zn-Pb-Ag-(Ba) deposits. Pyrite-bearing drill core samples were collected from seven drill holes that intersected sulfide mineralization and time-stratigraphically equivalent rocks at varied spatial distances extending up to 3 km away from the deposits to assess the relative timing of pyrite mineralization and the chemistry of pyrite paragenesis. There are four pyrite morphologies: framboids and polyframboids (Py1), subhedral to euhedral inclusion-free crystals (Py2a), silicate inclusion-bearing nodules with serrated edges (Py2b), and euhedral idiomorphic overgrowths on preexisting pyrite morphologies (Py3). These morphological varieties correspond in time from syngenetic to earliest diagenetic growth (Py1), early to late diagenetic growth (Py2a, Py2b), and metamorphic crystallization and/or recrystallization of previous textural varieties (Py3). A representative subset of pyrite grains was analyzed for trace element contents and distributions by laser ablation-inductively coupled plasma-mass spectrometry (LA-ICP-MS). Analyses by LA-ICP-MS reveal that each textural variety of pyrite has a distinct trace element composition that also varies depending on stratigraphic unit. A suite of clastic sediment-hosted sulfide mineralization-related elements was incorporated into Py2 within sulfide mineralized units at greater abundances than that in unmineralized units (e.g., Zn, As, Pb, Tl, Bi). Lead abundances and Pb/Se and As/Mo values in pyrite are the most robust vectoring tools documented. The timing for clastic sediment-hosted Zn-Pb mineralization was syn and/or post late diagenesis (Py2b). A Ba-enriched horizon was identified in rocks and this is interpreted to be the distal time-stratigraphic equivalent unit to Zn-Pb mineralization. The Ba-enriched horizon contains Py2 with anomalous metal (Tl, Co, Mn, Cd, Zn, Sb) contents and abundant macroscopic baryte, and it is interpreted to represent the distal expression of sulfide mineralization-forming hydrothermal activity. Four genetic models for mineralization are reviewed; however, the only model that is consistent with our whole rock and pyrite geochemistry involves venting of buoyant hydrothermal fluid, mixing with ambient seawater, and remaining or sinking into unconsolidated sediments, with lateral migration up to 2–3 km from the vent source.

Oxygen Isotope Offsets in Deep-Water Benthic Foraminifera

ABSTRACT Despite the extensive use of the benthic foraminiferal oxygen isotope composition (δ18O) as a proxy for paleoclimatic reconstructions, uncertainties remain regarding the consistency of interspecies offsets and the environmental factors controlling 18O fractionation. We investigated δ18O offsets of some frequently used Uvigerina, Bulimina, and Cibicidoides species in core top samples from different hydrographic and sedimentary regimes in the South China Sea, Makassar Strait, and Timor Strait/Eastern Indian Ocean. The δ18O values of the epifaunal taxa Cibicidoides mundulus and Cibicidoides wuellerstorfi showed no significant offset in all investigated regions, whereas shallow infaunal Cibicidoides species exhibited higher variability and were less reliable. We found no offsets between species of Uvigerina and Bulimina and assume that these genera can be measured together and/or substituted. Our results show that epifaunal taxa are close to equilibrium with ambient seawater and thus provide more reliable records of past ice volume and/or bottom water temperature variations than infaunal taxa. Offsets among equilibrium calcite, epifaunal taxa, and infaunal taxa are not constant “vital effects” but are influenced by changing gradients in bottom to pore water pH and carbonate ion concentrations that depend on deep-water ventilation and export flux of particulate carbonate and organic carbon. Offsets between epifaunal and infaunal taxa varied between 0.58 and 0.73‰, depending on regional bottom and pore water conditions. Our findings highlight the importance of regional and temporal variations in organic carbon flux/degradation and dissolution of calcite that may lead to slight under- or overestimates of the amplitude of δ18O fluctuations, especially during times of rapidly changing calcite-saturation of bottom and pore water.

Filtration and fertilisation effects of the bivalves Mytilus edulis and Magallana gigas on the kelp Saccharina latissima in tank culture

Biofouling by opportunistic epiphytes is a major concern in seaweed aquaculture. Colonisation of fouling organisms contributes to a reduction in algal performance as well as a lower quality crop. Further, epiphyte removal techniques often increase maintenance costs of cultivation systems. There have been a variety of methods to mitigate fouling in tank cultivations of seaweed, including the use of biological controls. Here, we present the use of filter feeding bivalves, the blue mussel (Mytilus edulis) and Pacific oyster (Magallana gigas), as a novel biofilter that also serves as a source of dissolved inorganic nitrogen in tank cultivations of the sugar kelp, Saccharina latissima. We observed significant reductions of fouling epiphytes on seaweed blades of around 50% by bivalve filtration, significant elevations of ammonium (NH4+) and phosphate (PO43−) by bivalves and alterations to kelp tissue quality when co-cultivated with bivalves rather than supplied with ambient seawater. Stable isotope ratios and seawater chlorophyll a concentrations provided evidence for bivalve biofiltration and the incorporation of their by-products into kelp tissue.