scholarly journals Full mitochondrial genome sequences of two endemic Philippine hornbill species (Aves: Bucerotidae) provide evidence for pervasive mitochondrial DNA recombination

BMC Genomics ◽  
2011 ◽  
Vol 12 (1) ◽  
Author(s):  
Svenja Sammler ◽  
Christoph Bleidorn ◽  
Ralph Tiedemann
2003 ◽  
Vol 18 (8) ◽  
pp. 411-417 ◽  
Author(s):  
Antonis Rokas ◽  
Emmanuel Ladoukakis ◽  
Eleftherios Zouros

2005 ◽  
Vol 17 (2) ◽  
pp. 69 ◽  
Author(s):  
Stefan Hiendleder ◽  
Valeri Zakhartchenko ◽  
Eckhard Wolf

The overall success of somatic cell nuclear transfer (SCNT) cloning is rather unsatisfactory, both in terms of efficacy and from an animal health and welfare point of view. Most research activities have concentrated on epigenetic reprogramming problems as one major cause of SCNT failure. The present review addresses the limited success of mammalian SCNT from yet another viewpoint, the mitochondrial perspective. Mitochondria have a broad range of critical functions in cellular energy supply, cell signalling and programmed cell death and, thus, affect embryonic and fetal development, suggesting that inadequate or perturbed mitochondrial functions may adversely affect SCNT success. A survey of perinatal clinical data from human subjects with deficient mitochondrial respiratory chain activity has revealed a plethora of phenotypes that have striking similarities with abnormalities commonly encountered in SCNT fetuses and offspring. We discuss the limited experimental data on nuclear–mitochondrial interaction effects in SCNT and explore the potential effects in the context of new findings about the biology of mitochondria. These include mitochondrial fusion/fission, mitochondrial complementation and mitochondrial DNA recombination, processes that are likely to be affected by and impact on SCNT cloning. Furthermore, we indicate pathways that could link epigenetic reprogramming and mitochondria effects in SCNT and address questions and perspectives for future research.


2004 ◽  
Vol 13 (24) ◽  
pp. 3171-3179 ◽  
Author(s):  
Marilena D'Aurelio ◽  
Carl D. Gajewski ◽  
Michael T. Lin ◽  
William M. Mauck ◽  
Leon Z. Shao ◽  
...  

2019 ◽  
Vol 13 ◽  
pp. 117793221987388
Author(s):  
Koji Ishiya ◽  
Fuzuki Mizuno ◽  
Li Wang ◽  
Shintaroh Ueda

The incompleteness of partial human mitochondrial genome sequences makes it difficult to perform relevant comparisons among multiple resources. To deal with this issue, we propose a computational framework for deducing missing nucleotides in the human mitochondrial genome. We applied it to worldwide mitochondrial haplogroup lineages and assessed its performance. Our approach can deduce the missing nucleotides with a precision of 0.99 or higher in most human mitochondrial DNA lineages. Furthermore, although low-coverage mitochondrial genome sequences often lead to a blurred relationship in the multidimensional scaling analysis, our approach can correct this positional arrangement according to the corresponding mitochondrial DNA lineages. Therefore, our framework will provide a practical solution to compensate for the lack of genome coverage in partial and fragmented human mitochondrial genome sequences. In this study, we developed an open-source computer program, MitoIMP, implementing our imputation procedure. MitoIMP is freely available from https://github.com/omics-tools/mitoimp .


Nature ◽  
1997 ◽  
Vol 387 (6630) ◽  
pp. 247-247 ◽  
Author(s):  
David H. Lunt ◽  
Bradley C. Hyman

2007 ◽  
Vol 3 (2) ◽  
pp. 189-192 ◽  
Author(s):  
Beata Ujvari ◽  
Mark Dowton ◽  
Thomas Madsen

Mitochondrial DNA (mtDNA) is the traditional workhorse for reconstructing evolutionary events. The frequent use of mtDNA in such analyses derives from the apparent simplicity of its inheritance: maternal and lacking bi-parental recombination. However, in hybrid zones, the reproductive barriers are often not completely developed, resulting in the breakdown of male mitochondrial elimination mechanisms, leading to leakage of paternal mitochondria and transient heteroplasmy, resulting in an increased possibility of recombination. Despite the widespread occurrence of heteroplasmy and the presence of the molecular machinery necessary for recombination, we know of no documented example of recombination of mtDNA in any terrestrial wild vertebrate population. By sequencing the entire mitochondrial genome (16 761 bp), we present evidence for mitochondrial recombination in the hybrid zone of two mitochondrial haplotypes in the Australian frillneck lizard ( Chlamydosaurus kingii ).


Genetics ◽  
2014 ◽  
Vol 198 (2) ◽  
pp. 755-771 ◽  
Author(s):  
Emilie S. Fritsch ◽  
Christophe D. Chabbert ◽  
Bernd Klaus ◽  
Lars M. Steinmetz

2012 ◽  
Vol 287 (44) ◽  
pp. 37259-37268 ◽  
Author(s):  
Jonathan D. Nardozzi ◽  
Xiaowen Wang ◽  
MacMillan Mbantenkhu ◽  
Stephan Wilkens ◽  
Xin Jie Chen

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