scholarly journals Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach

2014 ◽  
Vol 8 (1) ◽  
pp. 13 ◽  
Author(s):  
Pablo Meyer ◽  
Thomas Cokelaer ◽  
Deepak Chandran ◽  
Kyung Kim ◽  
Po-Ru Loh ◽  
...  
Keyword(s):  
Parameter Estimation ◽  
Experimental Design ◽  
Gene Regulatory Network ◽  
Network Topology ◽  
Regulatory Network ◽  
Design Methods ◽  
Community Based ◽  
Gene Regulatory

Improving gene regulatory network inference using network topology information

2015 ◽  
Vol 11 (9) ◽  
pp. 2449-2463 ◽  
Author(s):  
Ajay Nair ◽  
Madhu Chetty ◽  
Pramod P. Wangikar
Keyword(s):  
Gene Regulatory Network ◽  
Network Topology ◽  
Regulatory Network ◽  
Network Inference ◽  
Gene Regulatory Network Inference ◽  
Topology Information ◽  
Gene Regulatory

(a) maxPiter-algorithm and (b) maxPincrement-algorithm take only a fraction of existing method's time for different network types.

scholarly journals Publisher Correction: Exploring the effect of network topology, mRNA and protein dynamics on gene regulatory network stability

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Yipei Guo ◽  
Ariel Amir
Keyword(s):  
Protein Dynamics ◽  
Gene Regulatory Network ◽  
Network Topology ◽  
Regulatory Network ◽  
Network Stability ◽  
Gene Regulatory

A Correction to this paper has been published: https://doi.org/10.1038/s41467-021-21415-w

scholarly journals Optimal Experimental Design for a Bistable Gene Regulatory Network

2019 ◽  
Vol 52 (26) ◽  
pp. 255-261 ◽  
Author(s):  
Nathan Braniff ◽  
Addison Richards ◽  
Brian Ingalls
Keyword(s):  
Experimental Design ◽  
Gene Regulatory Network ◽  
Regulatory Network ◽  
Optimal Experimental Design ◽  
Gene Regulatory
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