scholarly journals ROCKETSHIP: a flexible and modular software tool for the planning, processing and analysis of dynamic MRI studies

2015 ◽  
Vol 15 (1) ◽  
Author(s):  
Samuel R. Barnes ◽  
Thomas S. C. Ng ◽  
Naomi Santa-Maria ◽  
Axel Montagne ◽  
Berislav V. Zlokovic ◽  
...  
2020 ◽  
Vol 116 ◽  
pp. 126033
Author(s):  
Julien J Malard ◽  
Jan Franklin Adamowski ◽  
Marcela Rojas Díaz ◽  
Jessica Bou Nassar ◽  
Nallusamy Anandaraja ◽  
...  

2007 ◽  
Vol 14 (6) ◽  
pp. 701-710 ◽  
Author(s):  
Sedat Alibek ◽  
Johannes Zenk ◽  
Alessandro Bozzato ◽  
Michael Lell ◽  
Markus Grunewald ◽  
...  

2022 ◽  
Vol 15 ◽  
Author(s):  
Margarita Ruiz-Olazar ◽  
Evandro Santos Rocha ◽  
Claudia D. Vargas ◽  
Kelly Rosa Braghetto

Computational tools can transform the manner by which neuroscientists perform their experiments. More than helping researchers to manage the complexity of experimental data, these tools can increase the value of experiments by enabling reproducibility and supporting the sharing and reuse of data. Despite the remarkable advances made in the Neuroinformatics field in recent years, there is still a lack of open-source computational tools to cope with the heterogeneity and volume of neuroscientific data and the related metadata that needs to be collected during an experiment and stored for posterior analysis. In this work, we present the Neuroscience Experiments System (NES), a free software to assist researchers in data collecting routines of clinical, electrophysiological, and behavioral experiments. NES enables researchers to efficiently perform the management of their experimental data in a secure and user-friendly environment, providing a unified repository for the experimental data of an entire research group. Furthermore, its modular software architecture is aligned with several initiatives of the neuroscience community and promotes standardized data formats for experiments and analysis reporting.


Author(s):  
Jonathan Lee ◽  
Gary Hoang ◽  
Chia-Shang Liu ◽  
Mark Shiroishi ◽  
Alexander Lerner ◽  
...  

Aim: To develop a modular software pipeline for robustly extracting 3D brain-surface models from MRIs for visualization or printing. No other end-to-end pipeline specialized for neuroimaging does this directly with an interchangeable combination of methods. Materials & methods: A software application was developed to dynamically generate Nipype workflows using interfaces from the Analysis of Functional NeuroImages, Advanced Normalization Tools, FreeSurfer, BrainSuite, Nighres and the FMRIB Software Library suites. The application was deployed for public use via the LONI pipeline environment. Results: In a small, head-to-head comparison test, a pipeline using FreeSurfer for both the skull stripping and cortical-mesh extraction stages earned the highest subjective quality scores. Conclusion: We have deployed a publicly available and modular software tool for extracting 3D models from brain MRIs to use in medical education.


2008 ◽  
Vol 34 (5) ◽  
pp. 456-463 ◽  
Author(s):  
I. Rodríguez ◽  
C. Simon ◽  
V. Sallarès ◽  
A. Carlosena ◽  
A. Mànuel ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document