scholarly journals Alternative DNA secondary structure formation affects RNA polymerase II promoter-proximal pausing in human

2018 ◽  
Vol 19 (1) ◽  
Author(s):  
Karol Szlachta ◽  
Ryan G. Thys ◽  
Naomi D. Atkin ◽  
Levi C. T. Pierce ◽  
Stefan Bekiranov ◽  
...  
Keyword(s):  
Secondary Structure ◽  
Rna Polymerase ◽  
Rna Polymerase Ii ◽  
Structure Formation ◽  
Dna Secondary Structure ◽  
Secondary Structure Formation

Control of guanine-rich DNA secondary structures depending on the protease activity using a designed PNA peptide

2015 ◽  
Vol 13 (7) ◽  
pp. 2022-2025 ◽  
Author(s):  
Kenji Usui ◽  
Arisa Okada ◽  
Keita Kobayashi ◽  
Naoki Sugimoto
Keyword(s):  
Secondary Structure ◽  
Structure Formation ◽  
Protease Activity ◽  
Secondary Structures ◽  
Regulation System ◽  
Dna Secondary Structure ◽  
Secondary Structure Formation ◽  
Dna Secondary Structures

A regulation system for DNA secondary structure formation of G-rich sequences using a designed PNA peptide exhibiting an enzyme-responsive functionality, depending on the protease activity was constructed.

scholarly journals DNA Secondary Structure Formation in Bacterial Gene Capture Systems at Single-Molecule Resolution

2014 ◽  
Vol 106 (2) ◽  
pp. 272a-273a
Author(s):  
Marko Swoboda ◽  
Maj Svea Grieb ◽  
Varsha Natarajan ◽  
Aleksandra Nivina ◽  
Didier Mazel ◽  
...  
Keyword(s):  
Secondary Structure ◽  
Structure Formation ◽  
Single Molecule ◽  
Dna Secondary Structure ◽  
Bacterial Gene ◽  
Gene Capture ◽  
Secondary Structure Formation

Characterization and expression of a spliced leader RNA in the parasitic nematode Ascaris lumbricoides var. suum

1989 ◽  
Vol 9 (8) ◽  
pp. 3543-3547
Author(s):  
T W Nilsen ◽  
J Shambaugh ◽  
J Denker ◽  
G Chubb ◽  
C Faser ◽  
...  
Keyword(s):  
Caenorhabditis Elegans ◽  
Secondary Structure ◽  
Rna Polymerase ◽  
Binding Site ◽  
Rna Polymerase Ii ◽  
Ascaris Lumbricoides ◽  
Parasitic Nematode ◽  
Secondary Structures ◽  
Spliced Leader ◽  
C Elegans

The parasitic nematode Ascaris spp. contains a 22-nucleotide spliced-leader (SL) sequence identical to the trans-SL previously described in Caenorhabditis elegans and other nematodes. The SL comprises the first 22 nucleotides of a approximately 110-base RNA and is transcribed by RNA polymerase II. The SL RNA contains a trimethylguanosine cap and a consensus Sm binding site. Furthermore, the Ascaris SL RNA has the potential to adopt a secondary structure which is nearly identical to potential secondary structures of similar SL RNAs in C. elegans and Brugia malayi.

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