scholarly journals Introducing R as a smart version of calculators enables beginners to explore it on their own

F1000Research ◽  
2021 ◽  
Vol 10 ◽  
pp. 859
Author(s):  
Krishna Choudhary ◽  
Alexander R. Pico

Rapid technological advances in the past decades have enabled molecular biologists to generate large-scale and complex data with affordable resource investments, or obtain such data from public repositories. Yet, many graduate students, postdoctoral scholars, and senior researchers in the biosciences find themselves ill-equipped to analyze large-scale data. Global surveys have revealed that active researchers prefer short training workshops to fill their skill gaps. In this article, we focus on the challenge of delivering a short data analysis workshop to absolute beginners in computer programming. We propose that introducing R or other programming languages for data analysis as smart versions of calculators can help lower the communication barrier with absolute beginners. We describe this comparison with a few analogies and hope that other instructors will find them useful. We utilized these in our four-hour long training workshops involving participatory live coding, which we delivered in person and via videoconferencing. Anecdotal evidence suggests that our exposition made R programming seem easy and enabled beginners to explore it on their own.

F1000Research ◽  
2016 ◽  
Vol 5 ◽  
pp. 2757 ◽  
Author(s):  
Nitesh Turaga ◽  
Mallory A. Freeberg ◽  
Dannon Baker ◽  
John Chilton ◽  
Anton Nekrutenko ◽  
...  

Galaxy provides a web-based platform for interactive, large-scale data analyses, which integrates bioinformatics tools written in a variety of languages. A substantial number of these tools are written in the R programming language, which enables powerful analysis and visualization of complex data. The Bioconductor Project provides access to these open source R tools and currently contains over 1200 R packages. While some R/Bioconductor tools are currently available in Galaxy, scientific research communities would benefit greatly if they were integrated on a larger scale. Tool development in Galaxy is an early entry point for Galaxy developers, biologists, and bioinformaticians, who want to make their work more accessible to a larger community of scientists. Here, we present a guide and best practices for R/Bioconductor tool integration into Galaxy. In addition, we introduce new functionalities to existing software that resolve dependency issues and semi-automate generation of tool integration components. With these improvements, novice and experienced developers can easily integrate R/Bioconductor tools into Galaxy to make their work more accessible to the scientific community.


1983 ◽  
Vol 38 ◽  
pp. 1-9
Author(s):  
Herbert F. Weisberg

We are now entering a new era of computing in political science. The first era was marked by punched-card technology. Initially, the most sophisticated analyses possible were frequency counts and tables produced on a counter-sorter, a machine that specialized in chewing up data cards. By the early 1960s, batch processing on large mainframe computers became the predominant mode of data analysis, with turnaround time of up to a week. By the late 1960s, turnaround time was cut down to a matter of a few minutes and OSIRIS and then SPSS (and more recently SAS) were developed as general-purpose data analysis packages for the social sciences. Even today, use of these packages in batch mode remains one of the most efficient means of processing large-scale data analysis.


Informatica ◽  
2011 ◽  
Vol 22 (1) ◽  
pp. 1-10 ◽  
Author(s):  
Gintautas Dzemyda ◽  
Leonidas Sakalauskas

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