Action: A New Metric for Evaluating the Energy Efficiency on High Performance Computing Platforms (ranked on Green500 List)

The need for new and more reliable metrics is always in demand. In this paper, a new metric is proposed for the evaluation of high performance computing platforms in conjunction with their energy consumption. The aim of the new metric is to reliably compare different HPC systems concerning their energy efficiency. The metric provides a mean to rank supercomputers of similar capabilities, avoiding the misleading results of metrics like performance-per-watt, currently used for ranking systems, as in the Green500 list, where systems with totally different sizes and capabilities are ranked consecutively. An example of this misuse for two adjacent systems in the Green500 list, is discussed. A comparative study for the energy efficiency of three high performance computing platforms, with different architectures, using the proposed metric is presented.

High-performance computing for SARS-CoV-2 RNAs clustering: a data science‒based genomics approach

Nowadays, Genomic data constitutes one of the fastest growing datasets in the world. As of 2025, it is supposed to become the fourth largest source of Big Data, and thus mandating adequate high-performance computing (HPC) platform for processing. With the latest unprecedented and unpredictable mutations in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the research community is in crucial need for ICT tools to process SARS-CoV-2 RNA data, e.g., by classifying it (i.e., clustering) and thus assisting in tracking virus mutations and predict future ones. In this paper, we are presenting an HPC-based SARS-CoV-2 RNAs clustering tool. We are adopting a data science approach, from data collection, through analysis, to visualization. In the analysis step, we present how our clustering approach leverages on HPC and the longest common subsequence (LCS) algorithm. The approach uses the Hadoop MapReduce programming paradigm and adapts the LCS algorithm in order to efficiently compute the length of the LCS for each pair of SARS-CoV-2 RNA sequences. The latter are extracted from the U.S. National Center for Biotechnology Information (NCBI) Virus repository. The computed LCS lengths are used to measure the dissimilarities between RNA sequences in order to work out existing clusters. In addition to that, we present a comparative study of the LCS algorithm performance based on variable workloads and different numbers of Hadoop worker nodes.

Integration of Web Processing Services with Workflow-Based Scientific Applications for Solving Environmental Monitoring Problems

Nowadays, developing and applying advanced digital technologies for monitoring protected natural territories are critical problems. Collecting, digitalizing, storing, and analyzing spatiotemporal data on various aspects of the life cycle of such territories play a significant role in monitoring. Often, data processing requires the utilization of high-performance computing. To this end, the paper addresses a new approach to automation of implementing resource-intensive computational operations of web processing services in a heterogeneous distributed computing environment. To implement such an operation, we develop a workflow-based scientific application executed under the control of a multi-agent system. Agents represent heterogeneous resources of the environment and distribute the computational load among themselves. Software development is realized in the Orlando Tools framework, which we apply to creating and operating problem-oriented applications. The advantages of the proposed approach are in integrating geographic information services and high-performance computing tools, as well as in increasing computation speedup, balancing computational load, and improving the efficiency of resource use in the heterogeneous distributed computing environment. These advantages are shown in analyzing multidimensional time series.