scholarly journals FIMTrack: An open source tracking and locomotion analysis software for small animals

2017 ◽  
Vol 13 (5) ◽  
pp. e1005530 ◽  
Author(s):  
Benjamin Risse ◽  
Dimitri Berh ◽  
Nils Otto ◽  
Christian Klämbt ◽  
Xiaoyi Jiang
PLoS ONE ◽  
2012 ◽  
Vol 7 (8) ◽  
pp. e42247 ◽  
Author(s):  
Julien Colomb ◽  
Lutz Reiter ◽  
Jedrzej Blaszkiewicz ◽  
Jan Wessnitzer ◽  
Bjoern Brembs

2019 ◽  
Vol 10 (12) ◽  
pp. 2163-2172
Author(s):  
Jannis Gottwald ◽  
Ralf Zeidler ◽  
Nicolas Friess ◽  
Marvin Ludwig ◽  
Christoph Reudenbach ◽  
...  

2019 ◽  
Author(s):  
Szilvia Zörgő ◽  
Gjalt - Jorn Ygram Peters

Applying Quantitative Ethnography (QE) techniques to continuous narratives in an inquiry where manual segmentation with a multitude of codes is preferred poses several challenges. In order to address these issues, we developed the Reproducible Open Coding Kit – convention, open source software, and interface – that eases manual coding, enables researchers to reproduce the coding process, compare results, and collaborate. The ROCK can also be employed to prepare data for Epistemic Network Analysis software. Our paper elaborates the challenges we encountered and the insights we gained while conducting a research project on decision-making regarding therapy choice among patients in Budapest, Hungary. Our aim is to broaden the usage of QE, while facilitating Open Science principles and transparency.


2018 ◽  
Vol 93 (7) ◽  
pp. 749-754
Author(s):  
Norbert Auer ◽  
Astrid Hrdina ◽  
Chaitra Hiremath ◽  
Sabine Vcelar ◽  
Martina Baumann ◽  
...  

PLoS ONE ◽  
2020 ◽  
Vol 15 (12) ◽  
pp. e0242459
Author(s):  
Emily M. Duncan ◽  
Alasdair Davies ◽  
Amy Brooks ◽  
Gawsia Wahidunnessa Chowdhury ◽  
Brendan J. Godley ◽  
...  

Rivers worldwide are now acting as major transport pathways for plastic pollution and discharge large quantities of waste into the ocean. Previous oceanographic modelling and current drifter data have been used to predict the movement and accumulation of plastic pollution in the marine environment, but our understanding of the transport and fate through riparian systems is still largely unknown. Here we undertook a proof of concept study by applying open source tracking technology (both GPS (Global Positing System) cellular networks and satellite technology), which have been successfully used in many animal movement studies, to track the movements of individual plastic litter items (500 ml PET (polyethylene terephthalate) drinks bottles) through the Ganges River system (known as the Ganga in India and the Padma and Meghna in Bangladesh, hereafter known as the Ganges) and the Bay of Bengal. Deployed tags were successfully tracked through the Ganges river system and into the Bay of Bengal marine system. The “bottle tags” were designed and built (e.g. shape, size, buoyancy) to replicate true movement patterns of a plastic bottle. The maximum distance tracked to date is 2845 km over a period of 94 days. We discuss lessons learnt from the development of these plastic litter tags, and outline how the potential widespread use of this open source technology has the ability to significantly increase understanding of the location of accumulation areas and the timing of large inputs of plastic pollution into the aquatic system. Furthermore, “bottle tags” may act as a powerful tool for stimulating social behaviour change, informing science-based policy, and as valuable educational outreach tools for public awareness.


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