scholarly journals Characterization of a novel member of the family Caulimoviridae infecting Dioscorea nummularia in the Pacific, which may represent a new genus of dsDNA plant viruses

PLoS ONE ◽  
2018 ◽  
Vol 13 (9) ◽  
pp. e0203038 ◽  
Author(s):  
Amit C. Sukal ◽  
Dawit B. Kidanemariam ◽  
James L. Dale ◽  
Robert M. Harding ◽  
Anthony P. James
2014 ◽  
Vol 95 (3) ◽  
pp. 601-613 ◽  
Author(s):  
Marisa Barbknecht ◽  
Sol Sepsenwol ◽  
Eric Leis ◽  
Maren Tuttle-Lau ◽  
Mark Gaikowski ◽  
...  

The freshwater fish Lepomis macrochirus (bluegill) is common to North American waters, and important both ecologically and as a sport fish. In 2001 an unknown virus was isolated from bluegills following a bluegill fish kill. This virus was identified as a picornavirus [termed bluegill picornavirus (BGPV)] and a diagnostic reverse transcriptase PCR was developed. A survey of bluegills in Wisconsin waters showed the presence of BGPV in 5 of 17 waters sampled, suggesting the virus is widespread in bluegill populations. Experimental infections of bluegills confirmed that BGPV can cause morbidity and mortality in bluegills. Molecular characterization of BGPV revealed several distinct genome characteristics, the most unusual of which is the presence of a short poly(C) tract in the 3′ UTR. Additionally, the genome encodes a polyprotein lacking a leader peptide and a VP0 maturation cleavage site, and is predicted to encode two distinct 2A proteins. Sequence comparison showed that the virus is most closely related to a phylogenetic cluster of picornaviruses that includes the genera Aquamavirus, Avihepatovirus and Parechovirus. However, it is distinct enough, for example sharing only about 38 % sequence identity to the parechoviruses in the 3D region, that it may represent a new genus in the family Picornaviridae.


2020 ◽  
Author(s):  
Zachary B. Hancock ◽  
Hiroshi Ogawa ◽  
Jessica E. Light ◽  
Mary K. Wicksten

ABSTRACTHaustoriid amphipods, despite their ubiquity in coastal sand or mud, have received little recent attention and their systematics and phylogenetics are largely unresolved. Some efforts have been made at classifying the family within the broader Amphipoda, but there is persistent incongruence in its placement among different authors and techniques. Furthermore, there exists no phylogenetic hypothesis of intrafamilial relationships despite the potential for rich biogeographic information to be gained given the specific habitat requirements of haustoriids and their limited dispersal abilities. In this work, we evaluate the competing hypotheses on the phylogenetic position of the Haustoriidae within Amphipoda by examining new and previously published sequences of nearly 100 species across 38 families. We find strong support for the Haustoriidae as basal gammarids, and that other families placed within the parvorder “Haustoriidira” are spread across Amphipoda. The radiation began during the Eocene and may have been driven in North America by the rapid filling of a coastal niche opened by the Chesapeake Bay impact crater. Unlike previous work, we find that the Pacific-endemic genus Eohaustorius is the most basal haustoriid, and that it separated from the rest of the family ~31 Mya. Finally, based on ancestral reconstructions, we provide taxonomic recommendations for relationships within Haustoriidae, including the elevation of a new genus, Cryptohaustorius. We conclude by recommending that the “Haustoriidira” be abandoned.


2015 ◽  
Vol 96 (4) ◽  
pp. 915-920 ◽  
Author(s):  
Mutien-Marie Garigliany ◽  
Jessica Börstler ◽  
Hanna Jöst ◽  
Marlis Badusche ◽  
Daniel Desmecht ◽  
...  
Keyword(s):  

Zootaxa ◽  
2013 ◽  
Vol 3599 (2) ◽  
pp. 136-160 ◽  
Author(s):  
ENRIQUE MACPHERSON ◽  
AYMEE ROBAINAS-BARCIA

The genus Lauriea belongs to the family Galatheidae and is easily differentiated from other genera of the family by the endopod of the uropod being much wider than long and the dactyli of the walking legs being curved and strongly biunguiculate. Examination of many specimens collected during recent expeditions from Madagascar to French Polynesia and using morphological and molecular data revealed the existence of six species, five of them new, that are genetically distinct yet morphologically very similar. Furthermore, another new species, having a triunguiculate P2–4 dactyli, represents a new genus, Triodonthea.


2006 ◽  
Vol 4 (2) ◽  
pp. 147-156 ◽  
Author(s):  
Armando Ortega-Lara ◽  
Pablo Lehmann A.

Cruciglanis pacifici, gen. et sp. nov., is described from the Dagua and Anchicaya Rivers on the Pacific slope of Colombia. The new genus is differentiated from the other genera in the family by the presence of an ossified crucifix-shaped second basibranchial; ectopterygoid bone shaped as an inverted comma, with its distal end narrow and directed medially towards the mesopterygoid; anterior fontanel elongated, reaching a transverse line at sensory canal opening of the sphenotic bone; caudal fin emarginated with rounded edges and ventral lobe more developed than the dorsal lobe; caudal fin with a dark spot from its base and fused with the peduncular spot, covering the anterior three quarters of its length, distal rim totally hyaline. Coloration of the species is described in vivo, and the shared diagnostic characters with the other genera within the Pseudopimelodidae are discussed. The phylogenetic position of the new genus is proposed and new insights in the family interrelationships are presented.


Zootaxa ◽  
2006 ◽  
Vol 1108 (1) ◽  
pp. 1 ◽  
Author(s):  
ROGER N. BAMBER

The Pacific collections by the MUSORSTOM campaigns of the Paris Museum over the last twenty years include a total of four species of Tanaidacea from shallow waters of the New Caledonia region and all new to science. These species are described herein, one in the family Tanaidae, Zeuxo (Parazeuxo) cloacarattus, and three in the family Leptocheliidae, viz. Pseudoleptochelia bulbus, the second Pacific species recorded for this genus, a species of the Leptochelia minuta agg. represented only by males, and a species with unusual cheliped carpus morphology which is placed in a new genus as Konarus cheiris.


2008 ◽  
Vol 153 (7) ◽  
pp. 1263-1270 ◽  
Author(s):  
Anna Maria Vaira ◽  
Clarissa J. Maroon-Lango ◽  
John Hammond

2004 ◽  
Vol 150 (2) ◽  
pp. 407-411 ◽  
Author(s):  
D. Gallitelli ◽  
M. Finetti-Sialer ◽  
G. P. Martelli
Keyword(s):  

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