scholarly journals A rapid multiplex PCR assay for species identification of Asian rice planthoppers (Hemiptera: Delphacidae) and its application to early-instar nymphs in paddy fields

PLoS ONE ◽  
2021 ◽  
Vol 16 (4) ◽  
pp. e0250471
Author(s):  
Toshihisa Yashiro ◽  
Sachiyo Sanada-Morimura

Rice (Oryza sativa L.) is the main cereal crop in many Asian countries. The Asian rice planthoppers, Nilaparvata lugens (Stål) (brown planthopper), Sogatella furcifera (Horváth) (white-backed planthopper), and Laodelphax striatellus (Fallén) (small brown planthopper) (Hemiptera: Delphacidae), are the most economically important pests of rice. These three rice planthopper species often co-occur in the same paddy field. Traditionally, species identification of individuals of the three rice planthopper species has relied on morphological characters, but accurate discrimination of early-instar nymphs is very difficult, even for expert researchers. In this study, we developed a rapid one-step multiplex PCR assay using conserved and species-specific 5.8S-ITS2 rDNA gene primers for simultaneous identification of individuals of the three rice planthopper species. The multiplex PCR results showed that the three rice planthopper species could be identified accurately based on the length of the resultant amplicon, regardless of the individual developmental stage. Furthermore, we applied this assay for the first accurate quantification of early-instar nymphs of each rice planthopper species in paddy fields. Notably, we found that the species composition of early-instar nymphs cannot be extrapolated from that of adults. Thus, the multiplex PCR assay developed here facilitates detection of each rice planthopper species at the beginning of outbreaks in paddy fields.

2011 ◽  
Vol 111 (6) ◽  
pp. 1349-1356 ◽  
Author(s):  
B.R. Shome ◽  
S. Das Mitra ◽  
M. Bhuvana ◽  
N. Krithiga ◽  
D. Velu ◽  
...  

Author(s):  
M Cahyadi ◽  
T Wibowo ◽  
Y P Nugraheni ◽  
A Fadhila ◽  
A Pramono ◽  
...  

2014 ◽  
Vol 163 ◽  
pp. 77-82 ◽  
Author(s):  
Thitika Kitpipit ◽  
Kuangtiwa Sittichan ◽  
Phuvadol Thanakiatkrai

2010 ◽  
Vol 100 (6) ◽  
pp. 701-706 ◽  
Author(s):  
E. Blanchet ◽  
L. Blondin ◽  
P.A. Gagnaire ◽  
A. Foucart ◽  
J.M. Vassal ◽  
...  

AbstractDefinition of the genus Calliptamus (Orthoptera: Acrididae) has generated many taxonomic debates. Even now, the existence of different geographical morphs hinders species determination, particularly as concerns females and larvae. Some of these species are observed in southern France and are recognized as potential pests. To circumvent problems of species identification in ecological surveys, we developed a single multiplex PCR method based on mitochondrial Cytochrome Oxydase I diagnostic polymorphisms to differentiate between the four species, Calliptamus italicus, C. wattenwylianus, C. siciliae and C. barbarus, in southern regions of France.


2011 ◽  
Vol 4 (1) ◽  
pp. 31-33 ◽  
Author(s):  
Xunhe Huang ◽  
Xiaoping Zhou ◽  
Qingxian Lin ◽  
Zhenni Peng ◽  
Wenzhen Fang ◽  
...  

PLoS ONE ◽  
2018 ◽  
Vol 13 (8) ◽  
pp. e0202433 ◽  
Author(s):  
Kyle M. Ewart ◽  
Greta J. Frankham ◽  
Ross McEwing ◽  
Dang Tat The ◽  
Carolyn J. Hogg ◽  
...  

PLoS ONE ◽  
2018 ◽  
Vol 13 (6) ◽  
pp. e0198565 ◽  
Author(s):  
Kyle M. Ewart ◽  
Greta J. Frankham ◽  
Ross McEwing ◽  
Dang Tat The ◽  
Carolyn J. Hogg ◽  
...  

2016 ◽  
Vol 1 (2) ◽  
pp. 38-42 ◽  
Author(s):  
Khairun Nessa ◽  
Dilruba Ahmed ◽  
Johirul Islam ◽  
FM Lutful Kabir ◽  
M Anowar Hossain

A multiplex PCR assay was evaluated for diagnosis of diarrheagenic Escherichia coli in stool samples of patients with diarrhoea submitted to a diagnostic microbiology laboratory. Two procedures of DNA template preparationproteinase K buffer method and the boiling method were evaluated to examine isolates of E. coli from 150 selected diarrhoeal cases. By proteinase K buffer method, 119 strains (79.3%) of E. coli were characterized to various categories by their genes that included 55.5% enteroaggregative E. coli (EAEC), 18.5% enterotoxigenic E. coli (ETEC), 1.7% enteropathogenic E. coli (EPEC), and 0.8% Shiga toxin-producing E. coli (STEC). Although boiling method was less time consuming (<24 hrs) and less costly (<8.0 US $/ per test) but was less efficient in typing E. coli compared to proteinase K method (41.3% vs. 79.3% ; p<0.001). The sensitivity and specificity of boiling method compared to proteinase K method was 48.7% and 87.1% while the positive and negative predictive value was 93.5% and 30.7%, respectively. The majority of pathogenic E. coli were detected in children (78.0%) under five years age with 53.3% under one year, and 68.7% of the children were male. Children under 5 years age were frequently infected with EAEC (71.6%) compared to ETEC (24.3%), EPEC (2.7%) and STEC (1.4%). The multiplex PCR assay could be effectively used as a rapid diagnostic tool for characterization of diarrheagenic E. coli using a single reaction tube in the clinical laboratory setting.Bangladesh J Med Microbiol 2007; 01 (02): 38-42


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