Open Architecture Expression Profiling of Plant Transcriptomes and Gene Discovery Using GeneCalling® Technology

2003 ◽  
pp. 381-394 ◽  
Author(s):  
Oswald R. Crasta ◽  
Otto Folkerts
2005 ◽  
Vol 105 (3-4) ◽  
pp. 301-315 ◽  
Author(s):  
C.M.T. Dvorak ◽  
K.A. Hyland ◽  
J.G. Machado ◽  
Y. Zhang ◽  
S.C. Fahrenkrug ◽  
...  

2006 ◽  
Vol 250 (1-2) ◽  
pp. 163-168 ◽  
Author(s):  
Jenni Jalkanen ◽  
Ramin Shariatmadari ◽  
Dwi Ari Pujianto ◽  
Petra Sipilä ◽  
Ilpo Huhtaniemi ◽  
...  

PLoS ONE ◽  
2014 ◽  
Vol 9 (7) ◽  
pp. e103583 ◽  
Author(s):  
Mohit Verma ◽  
Rajesh Ghangal ◽  
Raghvendra Sharma ◽  
Alok K. Sinha ◽  
Mukesh Jain

Nematology ◽  
2000 ◽  
Vol 2 (7) ◽  
pp. 719-731 ◽  
Author(s):  
Pierre Abad ◽  
David Bird ◽  
John Jones ◽  
James McCarter

AbstractProjects currently underway are generating thousands of publicly available DNA sequences representing numerous genes from plant parasitic nematodes. Use of these data has the potential to revolutionise gene discovery, as well as aiding in genome physical mapping and expression profiling experiments. This article introduces sequences called expressed sequence tags or ESTs, which are single-sequence reads from randomly-selected cDNA clones. We review the process used to create these sequences and outline the strengths and weaknesses of ESTs as research tools. Instructions on how to access and use EST data also are provided. Découverte rapide de gènes chez les nématodes parasites des plantes: le point sur l'utilisation des Etiquettes de Séquences Exprimées - Les projets actuellement en cours génèrent des milliers de séquences d'ADN, publiquement disponibles, représentant de nombreux gènes de nématodes parasites des plantes. L'utilisation de ces données pourrait révolutionner la découverte des gènes en facilitant aussi bien les expériences de cartographie physique que celles de profils d'expression. Cet article présente les séquences dérivées de clones d'ADNc sélectionnés au hasard, appelées étiquettes de séquences exprimées (ESTs). Nous exposons le processus utilisé pour les générer de même que les avantages et les inconvénients des ESTs comme outils de recherche. Les instructions concernant l'accès et l'utilisation des ESTs sont également fournies.


2002 ◽  
Vol 69 ◽  
pp. 135-142 ◽  
Author(s):  
Elena M. Comelli ◽  
Margarida Amado ◽  
Steven R. Head ◽  
James C. Paulson

The development of microarray technology offers the unprecedented possibility of studying the expression of thousands of genes in one experiment. Its exploitation in the glycobiology field will eventually allow the parallel investigation of the expression of many glycosyltransferases, which will ultimately lead to an understanding of the regulation of glycoconjugate synthesis. While numerous gene arrays are available on the market, e.g. the Affymetrix GeneChip® arrays, glycosyltransferases are not adequately represented, which makes comprehensive surveys of their gene expression difficult. This chapter describes the main issues related to the establishment of a custom glycogenes array.


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