scholarly journals Missing data imputation of climate datasets: implications to modeling extreme drought events

2014 ◽  
Vol 29 (1) ◽  
pp. 21-28 ◽  
Author(s):  
Gláucia Tatiana Ferrari ◽  
Vitor Ozaki
Keyword(s):  
Quality Control ◽  
Missing Data ◽  
Value Theory ◽  
The State ◽  
Agricultural Drought ◽  
Data Imputation ◽  
Missing Data Imputation ◽  
Control Procedures ◽  
Weather Stations ◽  
Agricultural Regions

Time series from weather stations in Brazil have several missing data, outliers and spurious zeroes. In order to use this dataset in risk and meteorological studies, one should take into account alternative methodologies to deal with these problems. This article describes the statistical imputation and quality control procedures applied to a database of daily precipitation from meteorological stations located in the State of Parana, Brazil. After imputation, the data went through a process of quality control to identify possible errors, such as: identical precipitation over seven consecutive days and precipitation values that differ significantly from the values in neighboring weather stations. Next, we used the extreme value theory to model agricultural drought, considering the maximum number of consecutive days with precipitation below 7 mm for the period between January and February, in the main soybean agricultural regions in the State of Parana.

scholarly journals Complex Data Imputation by Auto-Encoders and Convolutional Neural Networks—A Case Study on Genome Gap-Filling

Computers ◽  
2020 ◽  
Vol 9 (2) ◽  
pp. 37 ◽  
Author(s):  
Luca Cappelletti ◽  
Tommaso Fontana ◽  
Guido Walter Di Donato ◽  
Lorenzo Di Tucci ◽  
Elena Casiraghi ◽  
...  
Keyword(s):  
Deep Learning ◽  
Missing Data ◽  
State Of The Art ◽  
The State ◽  
Complex Data ◽  
Data Imputation ◽  
Genome Sequences ◽  
Missing Data Imputation ◽  
The Past ◽  
Learning Techniques

Missing data imputation has been a hot topic in the past decade, and many state-of-the-art works have been presented to propose novel, interesting solutions that have been applied in a variety of fields. In the past decade, the successful results achieved by deep learning techniques have opened the way to their application for solving difficult problems where human skill is not able to provide a reliable solution. Not surprisingly, some deep learners, mainly exploiting encoder-decoder architectures, have also been designed and applied to the task of missing data imputation. However, most of the proposed imputation techniques have not been designed to tackle “complex data”, that is high dimensional data belonging to datasets with huge cardinality and describing complex problems. Precisely, they often need critical parameters to be manually set or exploit complex architecture and/or training phases that make their computational load impracticable. In this paper, after clustering the state-of-the-art imputation techniques into three broad categories, we briefly review the most representative methods and then describe our data imputation proposals, which exploit deep learning techniques specifically designed to handle complex data. Comparative tests on genome sequences show that our deep learning imputers outperform the state-of-the-art KNN-imputation method when filling gaps in human genome sequences.

Evaluating the state-of-the-art in missing data imputation for clinical data (Preprint)

2021 ◽  
Author(s):  
Yuan Luo
Keyword(s):  
Time Series ◽  
Missing Data ◽  
Clinical Data ◽  
Data Analytics ◽  
State Of The Art ◽  
Ground Truth ◽  
The State ◽  
Data Imputation ◽  
Missing Data Imputation ◽  
Clinical Dataset

UNSTRUCTURED The Data Analytics Challenge on Missing data Imputation (DACMI) presented a shared clinical dataset with ground truth for evaluating and advancing the state-of-the-art in imputing missing data for clinical time series. The challenge attracted 12 international teams spanning three continents across multiple industries and academia. The challenge participating systems practically advanced the state-of-the-art with considerable margins, and their designing principles will inform future efforts to better model clinical missing data.

Continuous missing data imputation with incomplete dataset by generative adversarial networks–based unsupervised learning for long-term bridge health monitoring

2021 ◽  
pp. 147592172110219
Author(s):  
Huachen Jiang ◽  
Chunfeng Wan ◽  
Kang Yang ◽  
Youliang Ding ◽  
Songtao Xue
Keyword(s):  
Missing Data ◽  
Health Monitoring ◽  
Signal Transmission ◽  
Imputation Accuracy ◽  
Generative Adversarial Networks ◽  
Data Imputation ◽  
Sensor Failure ◽  
Generative Adversarial Network ◽  
Missing Data Imputation ◽  
Adversarial Network

Wireless sensors are the key components of structural health monitoring systems. During the signal transmission, sensor failure is inevitable, among which, data loss is the most common type. Missing data problem poses a huge challenge to the consequent damage detection and condition assessment, and therefore, great importance should be attached. Conventional missing data imputation basically adopts the correlation-based method, especially for strain monitoring data. However, such methods often require delicate model selection, and the correlations for vehicle-induced strains are much harder to be captured compared with temperature-induced strains. In this article, a novel data-driven generative adversarial network (GAN) for imputing missing strain response is proposed. As opposed to traditional ways where correlations for inter-strains are explicitly modeled, the proposed method directly imputes the missing data considering the spatial–temporal relationships with other strain sensors based on the remaining observed data. Furthermore, the intact and complete dataset is not even necessary during the training process, which shows another great superiority over the model-based imputation method. The proposed method is implemented and verified on a real concrete bridge. In order to demonstrate the applicability and robustness of the GAN, imputation for single and multiple sensors is studied. Results show the proposed method provides an excellent performance of imputation accuracy and efficiency.

scholarly journals Kernel weighted least square approach for imputing missing values of metabolomics data

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Nishith Kumar ◽  
Md. Aminul Hoque ◽  
Masahiro Sugimoto
Keyword(s):  
Missing Data ◽  
Large Scale ◽  
Missing Values ◽  
Kernel Weight ◽  
Least Square ◽  
Data Matrix ◽  
Data Imputation ◽  
Metabolomics Data ◽  
Missing Value ◽  
Missing Data Imputation

AbstractMass spectrometry is a modern and sophisticated high-throughput analytical technique that enables large-scale metabolomic analyses. It yields a high-dimensional large-scale matrix (samples × metabolites) of quantified data that often contain missing cells in the data matrix as well as outliers that originate for several reasons, including technical and biological sources. Although several missing data imputation techniques are described in the literature, all conventional existing techniques only solve the missing value problems. They do not relieve the problems of outliers. Therefore, outliers in the dataset decrease the accuracy of the imputation. We developed a new kernel weight function-based proposed missing data imputation technique that resolves the problems of missing values and outliers. We evaluated the performance of the proposed method and other conventional and recently developed missing imputation techniques using both artificially generated data and experimentally measured data analysis in both the absence and presence of different rates of outliers. Performances based on both artificial data and real metabolomics data indicate the superiority of our proposed kernel weight-based missing data imputation technique to the existing alternatives. For user convenience, an R package of the proposed kernel weight-based missing value imputation technique was developed, which is available at https://github.com/NishithPaul/tWLSA.

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