scholarly journals DeepVar: An End-to-End Deep Learning Approach for Genomic Variant Recognition in Biomedical Literature

2020 ◽  
Vol 34 (01) ◽  
pp. 598-605
Author(s):  
Chaoran Cheng ◽  
Fei Tan ◽  
Zhi Wei
Keyword(s):  
Deep Learning ◽  
Large Data ◽  
Biomedical Literature ◽  
Entity Recognition ◽  
Learning Approach ◽  
Learning Approaches ◽  
Genomic Variants ◽  
Low Resource ◽  
End To End ◽  
Genomic Variant

We consider the problem of Named Entity Recognition (NER) on biomedical scientific literature, and more specifically the genomic variants recognition in this work. Significant success has been achieved for NER on canonical tasks in recent years where large data sets are generally available. However, it remains a challenging problem on many domain-specific areas, especially the domains where only small gold annotations can be obtained. In addition, genomic variant entities exhibit diverse linguistic heterogeneity, differing much from those that have been characterized in existing canonical NER tasks. The state-of-the-art machine learning approaches heavily rely on arduous feature engineering to characterize those unique patterns. In this work, we present the first successful end-to-end deep learning approach to bridge the gap between generic NER algorithms and low-resource applications through genomic variants recognition. Our proposed model can result in promising performance without any hand-crafted features or post-processing rules. Our extensive experiments and results may shed light on other similar low-resource NER applications.

Deep Learning Approaches for Sentiment Analysis Challenges and Future Issues

2022 ◽  
pp. 27-50
Author(s):  
Rajalaxmi Prabhu B. ◽  
Seema S.
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Model Building ◽  
Large Data ◽  
Machine Learning Algorithms ◽  
Large Data Sets ◽  
Data Sets ◽  
Learning Approaches ◽  
Learning Techniques ◽  
Important Challenge

A lot of user-generated data is available these days from huge platforms, blogs, websites, and other review sites. These data are usually unstructured. Analyzing sentiments from these data automatically is considered an important challenge. Several machine learning algorithms are implemented to check the opinions from large data sets. A lot of research has been undergone in understanding machine learning approaches to analyze sentiments. Machine learning mainly depends on the data required for model building, and hence, suitable feature exactions techniques also need to be carried. In this chapter, several deep learning approaches, its challenges, and future issues will be addressed. Deep learning techniques are considered important in predicting the sentiments of users. This chapter aims to analyze the deep-learning techniques for predicting sentiments and understanding the importance of several approaches for mining opinions and determining sentiment polarity.

DeepSpectra: An end-to-end deep learning approach for quantitative spectral analysis

2019 ◽  
Vol 1058 ◽  
pp. 48-57 ◽  
Author(s):  
Xiaolei Zhang ◽  
Tao Lin ◽  
Jinfan Xu ◽  
Xuan Luo ◽  
Yibin Ying
Keyword(s):  
Spectral Analysis ◽  
Deep Learning ◽  
Learning Approach ◽  
Quantitative Spectral Analysis ◽  
End To End

scholarly journals A Study on the Evolution of Ransomware Detection Using Machine Learning and Deep Learning Techniques

IoT ◽  
2020 ◽  
Vol 1 (2) ◽  
pp. 551-604
Author(s):  
Damien Warren Fernando ◽  
Nikos Komninos ◽  
Thomas Chen
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Learning Approach ◽  
Learning Approaches ◽  
Learning Techniques ◽  
New Directions ◽  
Encryption Schemes ◽  
Malware Evolution ◽  
Number Of Citations ◽  
Research Studies

This survey investigates the contributions of research into the detection of ransomware malware using machine learning and deep learning algorithms. The main motivations for this study are the destructive nature of ransomware, the difficulty of reversing a ransomware infection, and how important it is to detect it before infecting a system. Machine learning is coming to the forefront of combatting ransomware, so we attempted to identify weaknesses in machine learning approaches and how they can be strengthened. The threat posed by ransomware is exceptionally high, with new variants and families continually being found on the internet and dark web. Recovering from ransomware infections is difficult, given the nature of the encryption schemes used by them. The increase in the use of artificial intelligence also coincides with this boom in ransomware. The exploration into machine learning and deep learning approaches when it comes to detecting ransomware poses high interest because machine learning and deep learning can detect zero-day threats. These techniques can generate predictive models that can learn the behaviour of ransomware and use this knowledge to detect variants and families which have not yet been seen. In this survey, we review prominent research studies which all showcase a machine learning or deep learning approach when detecting ransomware malware. These studies were chosen based on the number of citations they had by other research. We carried out experiments to investigate how the discussed research studies are impacted by malware evolution. We also explored the new directions of ransomware and how we expect it to evolve in the coming years, such as expansion into IoT (Internet of Things), with IoT being integrated more into infrastructures and into homes.

scholarly journals A general approach for improving deep learning-based medical relation extraction using a pre-trained model and fine-tuning

Database ◽  
2019 ◽  
Vol 2019 ◽  
Author(s):  
Tao Chen ◽  
Mingfen Wu ◽  
Hexi Li
Keyword(s):  
Deep Learning ◽  
Large Scale ◽  
Relation Extraction ◽  
Training Model ◽  
Biomedical Literature ◽  
Training Data ◽  
Fine Tuning ◽  
Learning Approaches ◽  
Additional Time ◽  
Clinical Records

Abstract The automatic extraction of meaningful relations from biomedical literature or clinical records is crucial in various biomedical applications. Most of the current deep learning approaches for medical relation extraction require large-scale training data to prevent overfitting of the training model. We propose using a pre-trained model and a fine-tuning technique to improve these approaches without additional time-consuming human labeling. Firstly, we show the architecture of Bidirectional Encoder Representations from Transformers (BERT), an approach for pre-training a model on large-scale unstructured text. We then combine BERT with a one-dimensional convolutional neural network (1d-CNN) to fine-tune the pre-trained model for relation extraction. Extensive experiments on three datasets, namely the BioCreative V chemical disease relation corpus, traditional Chinese medicine literature corpus and i2b2 2012 temporal relation challenge corpus, show that the proposed approach achieves state-of-the-art results (giving a relative improvement of 22.2, 7.77, and 38.5% in F1 score, respectively, compared with a traditional 1d-CNN classifier). The source code is available at https://github.com/chentao1999/MedicalRelationExtraction.

scholarly journals PestNet: An End-to-End Deep Learning Approach for Large-Scale Multi-Class Pest Detection and Classification

IEEE Access ◽  
2019 ◽  
Vol 7 ◽  
pp. 45301-45312 ◽  
Author(s):  
Liu Liu ◽  
Rujing Wang ◽  
Chengjun Xie ◽  
Po Yang ◽  
Fangyuan Wang ◽  
...  
Keyword(s):  
Deep Learning ◽  
Large Scale ◽  
Learning Approach ◽  
Pest Detection ◽  
End To End

scholarly journals Emotion analysis of Arabic tweets using deep learning approach

2019 ◽  
Vol 6 (1) ◽  
Author(s):  
Massa Baali ◽  
Nada Ghneim
Keyword(s):  
Machine Learning ◽  
Deep Learning ◽  
Media Analysis ◽  
Machine Learning Algorithms ◽  
Learning Approach ◽  
Learning Approaches ◽  
Social Media Analysis ◽  
Deep Convolutional Neural Networks ◽  
Emotion Analysis ◽  
Classification Tasks

Abstract Nowadays, sharing moments on social networks have become something widespread. Sharing ideas, thoughts, and good memories to express our emotions through text without using a lot of words. Twitter, for instance, is a rich source of data that is a target for organizations for which they can use to analyze people’s opinions, sentiments and emotions. Emotion analysis normally gives a more profound overview of the feelings of an author. In Arabic Social Media analysis, nearly all projects have focused on analyzing the expressions as positive, negative or neutral. In this paper we intend to categorize the expressions on the basis of emotions, namely happiness, anger, fear, and sadness. Different approaches have been carried out in the area of automatic textual emotion recognition in the case of other languages, but only a limited number were based on deep learning. Thus, we present our approach used to classify emotions in Arabic tweets. Our model implements a deep Convolutional Neural Networks (CNN) trained on top of trained word vectors specifically on our dataset for sentence classification tasks. We compared the results of this approach with three other machine learning algorithms which are SVM, NB and MLP. The architecture of our deep learning approach is an end-to-end network with word, sentence, and document vectorization steps. The deep learning proposed approach was evaluated on the Arabic tweets dataset provided by SemiEval for the EI-oc task, and the results-compared to the traditional machine learning approaches-were excellent.

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