A new robust codominant sex-linked STS marker for asparagus

2018 ◽  
pp. 51-58
Author(s):  
N.K. Stone ◽  
Z.M. Thomas ◽  
M.L. Roose
Keyword(s):  
1999 ◽  
Vol 25 (4) ◽  
pp. 370-375 ◽  
Author(s):  
Werner Hilgers ◽  
Gloria H. Su ◽  
Bas Groot Koerkamp ◽  
David J. Tang ◽  
Manu C. Shekher ◽  
...  

Genome ◽  
2008 ◽  
Vol 51 (4) ◽  
pp. 251-260 ◽  
Author(s):  
Kotaro Ishii ◽  
Ryuji Sugiyama ◽  
Megumi Onuki ◽  
Yusuke Kazama ◽  
Sachihiro Matsunaga ◽  
...  

Sex determination in Silene latifolia uses the XX/XY system. The recent evolution of dioecy in S. latifolia provides a unique opportunity to study the early stages of Y chromosome evolution. However, the current Y chromosome map still contains many large gaps with no available markers. In this study, a sequence tagged site (STS) marker, MS2, was isolated and mapped to the same locus as L8 on the Y chromosome. To investigate the peripheral regions of MS2, a bacterial artificial chromosome (BAC) library was constructed from a male plant, and the BAC clone containing MS2 (MS2-9d12F) was isolated from 32 640 clones with an average insert size of 115 kb. A 109-kb insert of the BAC clone was analyzed. BLASTX analysis showed 11 sequences similar to some known proteins, most of which are retrotransposon-like elements. The ORF Finder predicted 9 ORFs within MS2-9d12F. RT-PCR analyses revealed that only 4 of the 9 predicted ORFs are expressed in both male and female plants. These 4 ORFs are candidates for genes having counterparts on both the X and Y chromosomes. Dot-matrix plot analysis and a BLASTN search revealed LTR-like sequences close to the retrotransposon-like elements and high similarity to 3 known genomic sequences of S. latifolia. These results suggest an accumulation of retrotransposons and segmental duplications in peripheral regions of MS2 during the early stage of sex chromosome evolution.


1998 ◽  
Vol 97 (4) ◽  
pp. 535-540 ◽  
Author(s):  
S. Naik ◽  
K. S. Gill ◽  
V. S. Prakasa Rao ◽  
V. S. Gupta ◽  
S. A. Tamhankar ◽  
...  

2010 ◽  
Vol 9 (3) ◽  
pp. 331-336 ◽  
Author(s):  
Ji-shan NIU ◽  
Hai-yan JIA ◽  
Jun YIN ◽  
Bao-qin WANG ◽  
Zheng-qiang MA ◽  
...  

2008 ◽  
Vol 22 (4) ◽  
pp. 507-515 ◽  
Author(s):  
W. E. Wen ◽  
G. Q. Li ◽  
Z. H. He ◽  
W. Y. Yang ◽  
M. L. Xu ◽  
...  

Genome ◽  
2005 ◽  
Vol 48 (1) ◽  
pp. 41-45 ◽  
Author(s):  
A M Casas ◽  
S Yahiaoui ◽  
F Ciudad ◽  
E Igartua

The STS marker MWG699/TaqI is closely linked to the vrs1 locus and has been proposed as a marker of domestication in barley. This study included 257 cultivated barleys of both two- and six-rowed varieties, mainly from the western Mediterranean region. These included many landraces from the Spanish barley core collection, Moroccan landraces, and a set of accessions from other European countries. Restriction analysis of amplified DNA revealed three alleles, as previously described. Most of the two-rowed entries had the same allele, type K. Six-rowed entries showed both types A and D. Indeed, type D was widespread among Spanish landraces and commercial varieties from central Europe. It was also found in some two-rowed landraces originating from Spain and Morocco. Barleys with the D haplotype were predominantly winter types, whereas the A haplotype was evenly distributed among spring and winter types. These results support the existence of two different genetic sources among six-rowed Spanish landraces.Key words: barley, origin, SBCC, Spanish barley core collection, haplotype.


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