scholarly journals Variabilidad y síntomas causados por Iris yellow spot virus en Nicotiana benthamiana

Author(s):  
Katya Ornelas-Ocampo ◽  
Daniel Leobardo Ochoa-Martínez ◽  
Sergio Aranda-Ocampo ◽  
Sergio Ramírez-Rojas ◽  
Hernán García-Ruíz

<p>En cultivos de cebolla <em>Allium cepa</em> del estado de Morelos, México, se observan síntomas típicos y severos asociados a <em>Iris yellow spot virus </em>(IYSV). En esta investigación se estudiaron las alteraciones que ocasionan los aislamientos de IYSV procedentes de síntomas típicos y severos en <em>Nicotiana benthamiana</em>, las diferencias en el gen N y su filogenia. Cuatro aislamientos típicos y cinco severos inoculados mecánicamente causaron infección sistémica. En cámara bioclimática los aislamientos severos ocasionaron mayor severidad de síntomas. La secuencia del gen N de ambos aislamientos tuvo 98-99% de identidad con la nucleoproteína de IYSV y no se observaron cambios en la secuencia de nucleótidos entre ellos. Ambos aislamientos se agruparon con el genotipo IYSV<sub>BR</sub> y tuvieron mayor similitud con los reportados en Canadá y Estados Unidos.</p>

2018 ◽  
Vol 71 ◽  
pp. 39-44
Author(s):  
Melanie M. Davidson ◽  
Mette C. Nielson ◽  
John D. Fletcher

The Tospovirus Iris yellow spot virus (IYSV), transmitted by thrips (predominantly Thrips tabaci), was first recorded in New Zealand in 2007. In March 2015, symptoms of the virus were relatively widespread in an organically managed onion crop in Canterbury. Onion plants were sampled for the presence of T. tabaci adults and larvae and for IYSV symptoms on an organically managed farm in Canterbury in 2014-2015, 2015-16 and 2016-17, and on a similar farm in Hawke's Bay in 2014-2015 and 2015-16. An immunoassay was used to confirm the presence of IYSV in some symptomatic plants. In Canterbury, IYSV symptoms were less apparent in 2015-16 and no symptoms were observed in 2016-17. No IYSV symptoms were observed in the Hawke's Bay onion crop, despite relatively high T. tabaci numbers. The virus symptoms declined from when they were first observed in March 2015 to undetectable levels in 2016-17 in Canterbury, which may be attributed to crop location, fewer thrips and the absence of a disease reservoir in volunteer Allium cepa plants or other hosts.


Author(s):  
Norma Ávila Alistac ◽  
Sergio Ramírez Rojas ◽  
Ángel Rebollar Alviter ◽  
Remigio Anastacio Guzmán Plazola

<p>El objetivo de la investigación fue identificar hospedantes alternos de <em>Iris yellow spot virus</em> (IYSV) y establecer el rango de hospedantes del putativo vector(es) en regiones productoras de cebolla (<em>Allium cepa</em>) de Morelos y Michoacán, México. En 10 localidades de ambos estados se muestrearon cultivos de cebolla y arvenses, en presencia y ausencia del cultivo. Las plantas de cebolla se analizaron por RT-PCR y las arvenses por DAS-ELISA. Las arvenses se identificaron a nivel especie, los trips colectados de las mismas se establecieron colonias para su identificación por PCR, con iniciadores específicos que amplifican un segmento del gen de citocromo oxidasa I (COI). Se analizaron e identificaron 295 arvenses agrupadas en 56 especies (23 familias), todas resultaron negativas para IYSV. Se detectaron trips en 75 arvenses agrupadas en 17 especies. Se analizaron 33 poblaciones de trips (22 de Morelos y 11 de Michoacán). La secuenciación indicó identidad con <em>Thrips tabaci</em> con una homología superior a 97 %. Las arvenses <em>Ricinus communis</em> y <em>Acalypha ostryifolia</em> registraron el mayor número de <em>T. tabaci</em>. En cebolla se confirmó la presencia de IYSV con RT-PCR en las 10 parcelas muestreadas. Este es el primer reporte de la presencia de IYSV en el estado de Michoacán.</p>


Author(s):  
Norma Ávila Alistac ◽  
Sergio Ramírez Rojas ◽  
Ángel Rebollar Alviter ◽  
Remigio Anastacio Guzmán Plazola

<p>El objetivo de la investigación fue identificar hospedantes alternos de <em>Iris yellow spot virus</em> (IYSV) y establecer el rango de hospedantes del putativo vector(es) en regiones productoras de cebolla (<em>Allium cepa</em>) de Morelos y Michoacán, México. En 10 localidades de ambos estados se muestrearon cultivos de cebolla y arvenses, en presencia y ausencia del cultivo. Las plantas de cebolla se analizaron por RT-PCR y las arvenses por DAS-ELISA. Las arvenses se identificaron a nivel especie, los trips colectados de las mismas se establecieron colonias para su identificación por PCR, con iniciadores específicos que amplifican un segmento del gen de citocromo oxidasa I (COI). Se analizaron e identificaron 295 arvenses agrupadas en 56 especies (23 familias), todas resultaron negativas para IYSV. Se detectaron trips en 75 arvenses agrupadas en 17 especies. Se analizaron 33 poblaciones de trips (22 de Morelos y 11 de Michoacán). La secuenciación indicó identidad con <em>Thrips tabaci</em> con una homología superior a 97 %. Las arvenses <em>Ricinus communis</em> y <em>Acalypha ostryifolia</em> registraron el mayor número de <em>T. tabaci</em>. En cebolla se confirmó la presencia de IYSV con RT-PCR en las 10 parcelas muestreadas. Este es el primer reporte de la presencia de IYSV en el estado de Michoacán.</p>


2007 ◽  
Vol 155 (9) ◽  
pp. 531-535 ◽  
Author(s):  
C. Nischwitz ◽  
H. R. Pappu ◽  
S. W. Mullis ◽  
A. N. Sparks ◽  
D. R. Langston ◽  
...  

Author(s):  
Sergio Ramírez-Rojas ◽  
Katya Ornelas-Ocampo ◽  
Felipe De Jesús Osuna-Canizalez ◽  
Juan Carlos Bartolo-Reyes ◽  
Vicente Varela-Loza ◽  
...  

En el estado de Morelos recientemente se han observado enfermedades virales en cebolla (<em>Allium cepa</em>); una de ellas es la mancha amarilla causada por el <em>Iris yellow spot virus</em> perteneciente a la familia <em>Bunyaviridae</em> del género Tospovirus, el cual se trasmite a la cebolla por Thrips tabaci Lindeman (Thysanoptera: Thripidae). En el 2012 la incidencia de esta enfermedad fue de 100 % en las 2,500 ha cultivadas en la entidad con una severidad superior a 90 %. El objetivo de este trabajo fue detectar mediante RT-PCR en tiempo real y secuenciar la presencia de IYSV. Para su identificación se tomaron muestras de hojas de cebolla con manchas amarillentas alargadas, desde el trasplante hasta la cosecha en Tepalcingo, Morelos. La extracción de ARN total se realizó utilizando TRIzol® Reagent. La detección del virus se realizó con primers específicos al gen de la nucleoproteína de IYSV dando como resultado la amplificación de un producto específico mediante RT-PCR en tiempo real y una banda esperada de 896 pb la cual mediante secuenciación confirmó 99 % de identidad con el gen de la nucleoproteína de este virus. El IYSV fue detectado en plantas de cebolla en Tepalcingo, Morelos y su secuencia se registró en la base de datos del GenBank (JX946658).


Plant Disease ◽  
2008 ◽  
Vol 92 (8) ◽  
pp. 1247-1247 ◽  
Author(s):  
A. Bulajić ◽  
J. Jović ◽  
S. Krnjajić ◽  
M. Petrov ◽  
I. Djekić ◽  
...  

Iris yellow spot virus (IYSV; genus Tospovirus, family Bunyaviridae) is established in several European countries (France, Italy, The Netherlands, Poland, Slovenia, Spain, and the UK) and its distribution in the EU region has increased since 2002 (3). In July 2007, symptoms resembling those of IYSV were observed in an onion (Allium cepa) seed crop in the Sirig locality in Serbia. Onion plants exhibited characteristic symptoms of chlorotic or necrotic spindle and diamond-shaped lesions on the leaves and scapes. Symptomatic plants were found throughout the field and disease incidence was estimated at 80%. Leaf and scape samples were tested for the presence of IYSV and two other tospoviruses, Tomato spotted wilt virus (TSWV) and Impatiens necrotic spot virus (INSV), using commercial double-antibody sandwich (DAS)-ELISA diagnostic kits (Loewe Biochemica, Sauerlach, Germany). All samples tested negative for TSWV and INSV. IYSV was detected serologically in 26 of 34 onion samples. To determine an experimental host range, samples of IYSV-infected onion plants were homogenized in chilled 0.05 M phosphate buffer pH 7 containing 1 mM Na-EDTA, 5 mM Na-DIECA, and 5 mM Na-thioglycolate (2), and host plants were inoculated with the sap. Mechanical transmission of the virus occurred rarely. All inoculated test plants were assayed by DAS-ELISA and only four species tested positive for IYSV, but not in all replications. Inoculated Chenopodium quinoa developed local chlorotic lesions, Nicotiana tabacum cvs. Samsun and Prilep showed mild mosaic, while infected N. benthamiana were symptomless. For further confirmation of IYSV, conventional reverse transcription (RT)-PCR was performed on extracts made from symptomatic onion leaf material and from the ELISA-positive symptomless leaves of N. benthamiana. Total RNAs were extracted with an RNeasy Plant Mini Kit (Qiagen, Hilden, Germany) and RT-PCR was carried out with the OneStep RT PCR Kit (Qiagen) following the manufacturer's instructions. The primer pair, IYSV56U/IYSV917L, covering the entire nucleocapsid (NC) gene was used for both amplification and sequencing (1). A product of the correct predicted size (896 bp) was obtained from each of the plants assayed, and that derived from isolate 605-SRB was purified (QUIAqick PCR Purification Kit, Qiagen) and sequenced (GenBank Accession No. EU586203). BLAST analyses revealed 86 to 97% sequence identity with the NC gene from all other IYSV. The highest identity (97%) was with leek and onion isolates (GenBank Accession Nos. EF427447 and EF19888) from Spain. To our knowledge, this is the first report of IYSV infection of onion seed crop in Serbia. Thorough inspections and subsequent testing would be needed to establish the distribution and incidence of IYSV in Serbia. References: (1) I. Robène-Soustrade et al. Plant Pathol. 55:288, 2006. (2) P. Roggero et al. Plant Dis. 86:950, 2002. (3) C. Sansford and J. Woodhall. Pest Risk Analysis for Iris Yellow Spot Virus. Online publication. Central Science Laboratory, Sand Hutton, UK, 2007.


Plant Disease ◽  
2006 ◽  
Vol 90 (10) ◽  
pp. 1359-1359 ◽  
Author(s):  
M. E. Miller ◽  
R. R. Saldana ◽  
M. C. Black ◽  
H. R. Pappu

Iris yellow spot virus (IYSV; family Bunyaviridae, genus Tospovirus) has emerged as a potentially devastating and widespread virus of onion. IYSV was first reported in the United States from Idaho in 1993 and has since spread to many of the onion-producing areas (1). In South America, the most recent reports of the virus on onion were from Peru and Chile (2,4). In 2005, onion plants in Uvalde County, Texas exhibited necrotic lesions on leaves typical of IYSV and disease incidence approached 100% in some fields with yield loss and quality problems. Five of six plants tested were positive for IYSV with double antibody sandwich-enzyme linked immunosorbent assay (DAS-ELISA; Agdia Inc., Elkhart, IN). In 2006, similar lesions were observed on onion plants in Uvalde County and approximately 400 km south in Hidalgo and Cameron counties. Infection points generally started as a single plant near the edge of fields and spread to plants in a 3- to 4-m area after 1 to 2 weeks. Early-season disease incidence was low in onions grown for bulbs and transplants, <10% in 2006. Disease incidence increased in some fields until the crop was harvested. Leaves of symptomatic plants were tested for IYSV and Tomato spotted wilt virus (TSWV) using DAS-ELISA, and 18 of 23 samples from the Hidalgo County area and 12 of 21 samples from the Uvalde County area were positive for IYSV. All samples tested for TSWV from these counties were negative. Virus infection in some ELISA-positive plants was verified by reverse transcription-polymerase chain reaction (RT-PCR) using primers derived from the small RNA of IYSV. The primers flanked the IYSV nucleocapsid (N) gene (5′-TAA AAC AAA CAT TCA AAC AA-3′ and 5′-CTC TTA AAC ACA TTT AAC AAG CAC-3′ (3). RT-PCR gave a PCR product of expected size (approximately 1.2 kb). The DNA amplicon was cloned and sequenced (GenBank Accession No. DQ658242). Nucleotide sequence analysis confirmed the identity of the amplicon as that of IYSV N gene and sequence comparisons with known IYSV N gene sequences showed 95 to 98% sequence identity. The primary vector of IYSV, onion thrips (Thrips tabaci), is a widespread and destructive pest of onion in south Texas. The year-to-year incidence of IYSV and the severity of the disease will probably depend on the onion thrips population levels. Bulb yield reduction could be severe during years with high thrips populations. More research is needed to determine the impact of IYSV on bulb yield in Texas, the relationship between IYSV incidence and T. tabaci population levels, and oversummering hosts. To our knowledge, this is the first known report of IYSV in Texas. References: (1) D. H. Gent et al. Plant Dis. 88:446, 2004, (2) S. W. Mullis et al. Plant Dis. 90:377, 2006, (3) H. Pappu et al. Arch. Virol. 151:1015, 2006. (4) M. Rosales et al. Plant Dis. 89:1245, 2005.


Plant Disease ◽  
2007 ◽  
Vol 91 (9) ◽  
pp. 1203-1203 ◽  
Author(s):  
L. J. du Toit ◽  
J. T. Burger ◽  
A. McLeod ◽  
M. Engelbrecht ◽  
A. Viljoen

In December 2006, symptoms typical of iris yellow spot caused by Iris yellow spot virus (IYSV; genus Tospovirus, family Bunyaviridae) were observed on scapes (seed stalks) in an onion (Allium cepa L.) seed crop in the Klein Karoo of the Western Cape Province, South Africa. Symptoms included diamond-shaped chlorotic or necrotic lesions on the scapes, some of which had ‘green-islands’ with nested diamond-shaped lesions, as well as indistinct, circular to irregular, chlorotic or necrotic lesions of various sizes. At the time symptoms were observed, approximately 5% of the scapes had lodged as a result of extensive lesions resembling those caused by IYSV. The crop was 2 to 3 weeks from harvest. Symptomatic tissue from two plants (two samples from one plant and four samples from the other plant) was tested for IYSV by reverse-transcriptase (RT)-PCR. Total RNA was extracted from symptomatic scape tissue with the SV Total RNA Isolation System (Promega, Madison, WI) according to the manufacturer's instructions. First strand cDNA was synthesized with the RevertAid H Minus First Strand cDNA Synthesis kit (Fermentas Inc., Hanover, MD), followed by PCR amplification with primers IYSV-For (TGG YGG AGA TGY RGA TGT GGT) and IYSV-Rev (ATT YTT GGG TTT AGA AGA CTC ACC), which amplify the nucleocapsid (NP) gene of IYSV. An amplicon of expected size (approximately 750 bp) was observed for each of the symptomatic plants assayed and was sequenced. Comparison of the sequence (GenBank Accession No. EF579801) with GenBank sequences revealed 95% sequence identity with the NP gene of IYSV GenBank Accession No. EF419888, with eight amino acid differences. The known geographic distribution of IYSV in onion bulb or seed crops has increased rapidly in recent years in many areas of the world (1). To our knowledge, this is the first confirmation of IYSV in South Africa. Approximately 6,100 ha of onion bulb crops are grown annually in South Africa in the Western Cape, Kwazulu Natal, Limpopo, and Northern Cape provinces, and 600 ha of onion seed crops are grown primarily in the semi-arid regions of the Western Cape. Examination of an additional 10 onion seed crops in the Klein Karoo during January 2007 revealed the presence of iris yellow spot in three more crops at approximately 5% incidence in each crop. The four symptomatic crops had all been planted as bulb-to-seed crops, using vernalized bulbs produced on the same farm. This suggests that IYSV may have been disseminated into the seed crops on the vernalized bulbs, either as infected bulb tissue or in viruliferous thrips on the bulbs. Reference: (1) D. H. Gent et al. Plant Dis. 90:1468, 2006.


2018 ◽  
Vol 15 (1) ◽  
Author(s):  
Cui Yu ◽  
Cuiyun Yang ◽  
Shaoyi Song ◽  
Zixiang Yu ◽  
Xueping Zhou ◽  
...  

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