Niveoporofomes (Basidiomycota, Fomitopsidaceae) in Tropical Africa: Niveoporofomes oboensis sp. nov. and N.widdringtoniae comb. nov., two species from Afromontane Forests

2021 ◽  
Author(s):  
Cony Antonio Decock ◽  
Leif Ryvarden ◽  
Mario Amalfi
Keyword(s):  
National Park ◽  
Phylogenetic Analyses ◽  
A Priori ◽  
Brown Rot ◽  
Montane Forest ◽  
New Combination ◽  
Tropical Africa ◽  
Multiple Loci ◽  
Afromontane Forests

Abstract During a survey of polypores in the montane forest of the Ôbo de São Tomé National Park, in the western African, equatorial island of São Tomé, a specimen that was, a priori, related to Fomitopsis, based on the gross morphology of the basidiome and a brown rot, showed deviating features including subglobose basidiospores with a large gutta, what pointed toward Niveoporofomes. Phylogenetic inferences based on multiple loci dataset (ITS-nLSU-nSSU-tef1-rpb2) confirmed these affinities, and Niveoporofomes oboensis is described as new. The species is compared to Fomitopsis widdringtoniae, known from southeast Africa, which is characterized also by subglobose basidiospores; hence, the new combination N. widdringtoniae is proposed. The new combination Niveoporofomes globosporus (basionym Trametes globospora) is also proposed based on phylogenetic analyses. A key to the species of Fomitopsis, Niveoporofomes, Rhodofomes, and Rhodofomitopsis in Tropical Africa is presented.

A bizarre new species of Lynchius (Amphibia, Anura, Strabomantidae) from the Andes of Ecuador and first report of Lynchius parkeri in Ecuador

Zootaxa ◽  
2019 ◽  
Vol 4567 (1) ◽  
pp. 1 ◽  
Author(s):  
JUAN C. SÁNCHEZ-NIVICELA ◽  
VERONICA L. URGILES ◽  
MARÍA JOSÉ NAVARRETE ◽  
MARIO H. YÁNEZ-MUÑOZ ◽  
SANTIAGO RON
Keyword(s):  
New Species ◽  
Dna Sequences ◽  
National Park ◽  
Phylogenetic Analyses ◽  
Montane Forest ◽  
X Rays ◽  
Dorsal Region ◽  
The Andes ◽  
Southern Ecuador ◽  
A New Species

We describe a new species of Lynchius from the eastern montane forest of southern Ecuador. We also report the occurrence of L. parkeri in Ecuador, on paramos of Yacuri National Park, near the border with Peru. We used morphological and genetic evidence for the description of the new species and the new report of L. parkeri. Phylogenetic analyses were carried out using both maximum likelihood and Bayesian inference on DNA sequences for mitochondrial and nuclear genes. The phylogeny shows that L. simmonsi is sister to a clade composed of the remaining species of Lynchius and that the new species is sister to L. flavomaculatus. The new species has a prominent and heavily ossified head with noticeably spiculate cranial exostosis that easily distinguishes it from all its congeners. The dorsal region and limbs present several reduced subconical and rounded tubercles and pronounced dermal ridges on the dorsum. We also describe the osteology of the new species based on x-rays of the holotype. Only six species of Lynchius, two known to occur in Ecuador (L. flavomaculatus and L. simmonsi). The description of L. megacephalus sp. n. and new record of L. parkeri double the number of known Lynchius in Ecuador and suggest that the diversity of Ecuadorian and Peruvian Lynchius is still underestimated.

scholarly journals Three new species of Inosperma (Agaricales, Inocybaceae) from Tropical Africa

MycoKeys ◽  
2021 ◽  
Vol 77 ◽  
pp. 97-116
Author(s):  
Hyppolite L. Aïgnon ◽  
Sana Jabeen ◽  
Arooj Naseer ◽  
Nourou S. Yorou ◽  
Martin Ryberg
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Interspecific Variation ◽  
New Combination ◽  
Molecular Evidence ◽  
Tropical Africa ◽  
Old World ◽  
Weak Support ◽  
Three New Species ◽  
Clade 1

Here, we describe three new species of Inosperma from Tropical Africa: Inosperma africanum, I. bulbomarginatum and I. flavobrunneum. Morphological and molecular data show that these species have not been described before, hence need to be described as new. The phylogenetic placements of these species were inferred, based on molecular evidence from sequences of 28S and RPB2. Additional analysis using ITS dataset shows interspecific variation between each species. Phylogenetic analyses resolve I. flavobrunneum in Old World Tropical clade 1 with weak support, I. bulbomarginatum is sister of Old World Tropical clade 1 and I. africanum is indicated as sister to the rest of Inosperma. Complete description and illustrations, including photographs and line drawings, are presented for each species. A new combination of Inocybe shawarensis into Inosperma is also proposed.

scholarly journals Towards a Natural Classification of Hyphodontia Sensu Lato and the Trait Evolution of Basidiocarps within Hymenochaetales (Basidiomycota)

2021 ◽  
Vol 7 (6) ◽  
pp. 478
Author(s):  
Xue-Wei Wang ◽  
Tom W. May ◽  
Shi-Liang Liu ◽  
Li-Wei Zhou
Keyword(s):  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Ancestral State ◽  
Trait Evolution ◽  
Natural Classification ◽  
Multiple Loci ◽  
The Family ◽  
Phylogenetic Perspective ◽  
Taxonomic Framework ◽  
First Time

Hyphodontia sensu lato, belonging to Hymenochaetales, accommodates corticioid wood-inhabiting basidiomycetous fungi with resupinate basidiocarps and diverse hymenophoral characters. Species diversity of Hyphodontia sensu lato has been extensively explored worldwide, but in previous studies the six accepted genera in Hyphodontia sensu lato, viz. Fasciodontia, Hastodontia, Hyphodontia, Kneiffiella, Lyomyces and Xylodon were not all strongly supported from a phylogenetic perspective. Moreover, the relationships among these six genera in Hyphodontia sensu lato and other lineages within Hymenochaetales are not clear. In this study, we performed comprehensive phylogenetic analyses on the basis of multiple loci. For the first time, the independence of each of the six genera receives strong phylogenetic support. The six genera are separated in four clades within Hymenochaetales: Fasciodontia, Lyomyces and Xylodon are accepted as members of a previously known family Schizoporaceae, Kneiffiella and Hyphodontia are, respectively, placed in two monotypic families, viz. a previous name Chaetoporellaceae and a newly introduced name Hyphodontiaceae, and Hastodontia is considered to be a genus with an uncertain taxonomic position at the family rank within Hymenochaetales. The three families emerged between 61.51 and 195.87 million years ago. Compared to other families in the Hymenochaetales, these ages are more or less similar to those of Coltriciaceae, Hymenochaetaceae and Oxyporaceae, but much older than those of the two families Neoantrodiellaceae and Nigrofomitaceae. In regard to species, two, one, three and 10 species are newly described from Hyphodontia, Kneiffiella, Lyomyces and Xylodon, respectively. The taxonomic status of additional 30 species names from these four genera is briefly discussed; an epitype is designated for X. australis. The resupinate habit and poroid hymenophoral configuration were evaluated as the ancestral state of basidiocarps within Hymenochaetales. The resupinate habit mainly remains, while the hymenophoral configuration mainly evolves to the grandinioid-odontioid state and also back to the poroid state at the family level. Generally, a taxonomic framework for Hymenochaetales with an emphasis on members belonging to Hyphodontia sensu lato is constructed, and trait evolution of basidiocarps within Hymenochaetales is revealed accordingly.

Phylogenetic analyses of nucleotide sequences confirm a unique plant intercontinental disjunction between tropical Africa, the Caribbean, and the Hawaiian Islands

2009 ◽  
Vol 123 (1) ◽  
pp. 57-65 ◽  
Author(s):  
Sandra Namoff ◽  
Quentin Luke ◽  
Francisco Jiménez ◽  
Alberto Veloz ◽  
Carl E. Lewis ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Hawaiian Islands ◽  
Nucleotide Sequences ◽  
Tropical Africa ◽  
The Caribbean

Generic classification of some more hyphomycetes with solitary conidia borne on phialides

1998 ◽  
Vol 76 (9) ◽  
pp. 1570-1583 ◽  
Author(s):  
W Gams ◽  
K O'Donnell ◽  
H -J Schroers ◽  
M Christensen
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Elongation Factor ◽  
28S Rdna ◽  
New Combination ◽  
Rdna Sequences ◽  
28S Rdna Sequences ◽  
Three New Species ◽  
Morphological Species

Unlike most phialide-producing fungi that liberate a multiplicity of conidia from each conidiogenous cell, only single conidia are formed on phialide-like conidiogenous cells in Aphanocladium, Verticimonosporium, and some species of Sibirina. A group of isolates obtained from soil of native Artemisia tridentata (sagebrush) grassland in Wyoming and from desert soil in Iraq is compared with these genera and classified as a fourth genus, Stanjemonium, honouring Stanley J. Hughes. Phylogenetic analyses of partial nuclear small- (18S) and large-subunit (28S) rDNA sequences indicate that Stanjemonium spp. form a monophyletic group with Emericellopsis. Sequences from the nuclear 18S and 28S rDNA were too conserved to resolve morphological species of Stanjemonium; however, phylogenetic analysis of b-tubulin and translation elongation factor 1a gene exons and introns resolved all species distinguished morphologically. Numerous conidiogenous cells or denticles are scattered along the cells of aerial hyphae in Aphanocladium and Stanjemonium spp., very rapidly collapsing into denticles in the former, somewhat more persistent and leaving broad scars in the latter. In Cladobotryum-Sibirina and Verticimonosporium spp., conidiogenous cells are discrete in terminal and intercalary whorls; phialides of the latter taxon are particularly swollen. The taxonomy of Aphanocladium is not yet resolved. Two species are recognized in Verticimonosporium. Three new species of Stanjemonium are described, and one new combination from Aphanocladium is proposed, along with one new species of Cladobotryum.Key words: Aphanocladium, Cladobotryum, conidiogenesis, hyphomycetes, molecular phylogeny, phialide, Stanjemonium, systematics, Verticimonosporium.

scholarly journals The genus Tristachya (Poaceae: Panicoideae) in Madagascar

Kew Bulletin ◽  
2021 ◽  
Author(s):  
Maria S. Vorontsova ◽  
Nantenaina H. Rakotomalala
Keyword(s):  
Protected Area ◽  
National Park ◽  
New Combination ◽  
Distribution Map ◽  
Conservation Assessments ◽  
Rare Endemic ◽  
Common Components

SummaryWe present a revision of the three species of Tristachya in Madagascar. The tussock-forming T. betsileensis is a rare endemic of the quartz outcrops in the Itremo Protected Area. The rhizomatous T. isalensis and T. humbertii are common components of the sandstone outcrop vegetation in the Isalo National Park. A new combination is made. Descriptions, conservation assessments, illustrations, and a distribution map are presented.

Notes on the systematics and nomenclature of Tritonia (Iridaceae: Crocoideae)

Bothalia ◽  
2006 ◽  
Vol 36 (1) ◽  
pp. 57-61
Author(s):  
P. Goldblatt ◽  
J. C. Manning
Keyword(s):  
South Africa ◽  
Field Studies ◽  
Type Specimen ◽  
New Combination ◽  
Western Cape ◽  
Tropical Africa ◽  
Western Half

Study of some early types of species now known to belong to the genus  Tritonia Ker Gaw l.. a member of Iridaceae. sub­family Crocoideae, comprising some 28 species of southern and south tropical Africa, has shown the need for some nomen- clatural adjustments. Ixia undulata Burm.f. (1768) is an earlier name for T. crispa (L.f.) Ker Gawl. based on Gladiolus crispus L.f. (1782) and the combination  T. undulata (Burm.f.) Baker must be used for the species, which is native to the western half of Western Cape, South Africa. The variety  T. crispa var. parx iflora is also reduced to synonymy. The type specimen of Ixia gladiolaris Lam. (1789), currently considered a synonym of Tritonia securigera (Aiton) Ker Gawl.. has flowers that lack the characteristic tooth-like ridges on the lower tepals of the latter, and corresponds closely to the eastern southern African  T.  lineata (Salisb.) Ker Gawl., based on Gladiolus lineatus Salisb. (1796). The new combination  T. gladiolaris (Lam.) Goldblatt J.C. Manning is made and  T. lineata is reduced to synonymy.  Montbretia lacerata and  Tritonia lacerata. erroneously regarded as synonyms of T. crispa, are combinations based on Gladiolus laceratus Burm.f., a species that remains unidenti­fied because no type is known and the description is too vague to permit its identification. Lastly, field studies have shown that the cnsped-leaved T. watermeveri is connected by a series of morphological intermediates to typical  T. securigera. which has straight leaves and identical flowers. The new combination  T. securigera subsp. watermeveri (L.Bolus) J.C.Manning Goldblatt is proposed for this taxon.

Two new phyllocoptine species and new records of eriophyoid mites (Eriophyidae, Phyllocoptinae) from Crimea, with evaluation of the phylogenetic position of the new taxa using GenBank data

2019 ◽  
Vol 24 (5) ◽  
pp. 882
Author(s):  
Philipp Chetverikov ◽  
Pavel Klimov ◽  
Viktoria Yu. Letukhova ◽  
Géza Ripka ◽  
Sarah Zukoff
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Mite Species ◽  
New Combination ◽  
Phylogenetic Position ◽  
Endemic Plant ◽  
Plant Host ◽  
Mitochondrial Coi ◽  
Rdna Sequences ◽  
Eriophyoid Mites

We describe two new species and report new occurrences for six species of eriophyid mites (Eriophyoidea: Eriophyidae) in Crimea: Abacarus denticulifer n. sp. from Agropyron cristatum (L.) Gaertn. (Poaceae), Aceria aculiformis Sukhareva 1986 from Melica ciliata L. (Poaceae), Aceria peucedani (Canestrini 1891) from Seseli tortuosum L. (Apiaceae), Anthocoptes recki (Bagdasarian 1972) n. comb. (from Tegonotus) from Pistacia atlantica subsp. mutica (Fisch. & C.A. Mey.) (Anacardiaceae), Epitrimerus inulae Farkas 1963 from Inula germanica L. (Asteraceae), Phyllocoptes sanctus n. sp. from Potentilla recta subsp. obscura (Willd.) (Rosaceae), Phyllocoptes bilobospinosus Chetverikov 2019 (in Chetverikov et al. 2019) from Tamarix spp. (Tamaricaceae), Tegoprionus dentatus (Nalepa 1891) from Galium verum L. (Rubiaceae). For an Indian phyllocoptine mite species associated with Apluda mutica L. (Poaceae), a new combination was proposed: Abacarus muticus (Sur & Chakrabarti 2017) n. comb. (from Mesalox). Mitochondrial COI and D2 28S rDNA sequences of three phyllocoptine species from Crimea were obtained: A. denticulifer n. sp. (GenBank accession numbers MK415989 and MK408623), P. bilobospinosus (MK408624), and P. sanctus n. sp. (MK415988 and MK408622). Comparison of all COI and D2 28S sequences of Eriophyoidea from GenBank showed that sequences JF920111 and JF920110 Aceria tulipae are identical to JF920101 Aceria tosichella, and D2 28S sequence KP297379 Tegolophus sp. is identical to KM111079 Shevtchenkella sp., which indicates either one or more misidentifications or sample contamination. Molecular phylogenetic analyses (a) confirmed the morphology-based assignment of A. denticulifer n. sp. to the Abacarus hystrix s.l. species complex, (b) supported the monophyly of Abacarus hystrix s.l., (c) revealed that the genera Phyllocoptes, Epitrimerus, and Calepitrimerus are paraphyletic, and (d) indicated that Phyllocoptini (including P. sanctus n. sp.), which are associated with Rosaceae and Caprifoliaceae, are monophyletic. The position of P. bilobospinosus was uncertain in all analyses. Based on the results of our study, it is recommended that descriptions of new species in large, putatively paraphyletic genera of Eriophyoidea include comparisons with mite species associated with the same plant family. Our work also provides new evidence that a species in a large complex of cryptic species could have evolved a distinct morphology if it is associated with an endemic plant host restricted to a geographically isolated area.

scholarly journals Morphological and molecular characterisation of Hoplolaimus smokyensis n. sp. (Nematoda: Hoplolaimidae), a lance nematode from Great Smoky Mountains National Park, USA

Nematology ◽  
2019 ◽  
Vol 21 (9) ◽  
pp. 923-935 ◽  
Author(s):  
Xinyuan Ma ◽  
Robert T. Robbins ◽  
Ernest C. Bernard ◽  
Claudia M. Holguin ◽  
Paula Agudelo
Keyword(s):  
Dna Sequences ◽  
National Park ◽  
Phylogenetic Analyses ◽  
Mitochondrial Gene ◽  
Tail Region ◽  
Head Region ◽  
Lateral Field ◽  
Great Smoky Mountains ◽  
Smoky Mountains ◽  
Lance Nematode

Summary Hoplolaimus smokyensis n. sp. is a new species of lance nematode collected in Great Smoky Mountains National Park, USA. Females of H. smokyensis n. sp. have a labial region characterised by six, occasionally five, annules. The basal lip annule is subdivided by about 24 longitudinal striae. The stylet averages 47 μm long with robust, tulip-shaped stylet knobs bearing anterior projections. The hemizonid is ca 4 μm anterior to the excretory pore. The lateral field is incompletely areolated and has four continuous incisures from the metacorpus region to the tail region. There are three pharyngeal gland nuclei. Vulval epiptygma are absent. The scutellate phasmids are located one anterior and one posterior to the vulva. The male is shorter than the female and the head region is higher and more rounded than that of the female. The bursa extends to the tail tip and the gubernaculum is large and protrusible and has titillae and a capitulum. Morphologically, H. smokyensis n. sp. is most similar to H. galeatus and H. stephanus, but can be distinguished by differences such as the number of annules and longitudinal striae on the lip region and morphometric values. Hoplolaimus smokyensis n. sp. is also genetically distinct from other species according to comparisons of ribosomal and mitochondrial DNA sequences. Phylogenetic analyses based on ribosomal and mitochondrial gene sequences suggest that H. smokyensis n. sp. is a lineage distinct from related Hoplolaimus species.

scholarly journals Phylogenetic placement of Paratrichaptum and reconsideration of Gloeophyllales

2020 ◽  
Vol 5 (1) ◽  
pp. 119-130 ◽  
Author(s):  
C.-C. Chen ◽  
B. Cao ◽  
T. Hattori ◽  
B.-K. Cui ◽  
C.-Y. Chen ◽  
...  
Keyword(s):  
Phylogenetic Analyses ◽  
Strong Support ◽  
Brown Rot ◽  
Phylogenetic Position ◽  
Nuclear Rdna ◽  
Protein Coding ◽  
Phylogenetic Placement ◽  
The Family ◽  
Ancestral States ◽  
Relic Species

Paratrichaptum accuratum is a large conspicuous polypore fungus growing on dead or living angiosperm trees in subtropical-boreal areas of China, Indonesia, Japan, and Taiwan. The present study places P. accuratum in the family Gloeophyllaceae that belongs to the order Gloeophyllales within Agaricomycetes (Basidiomycota), based on evidence derived from morphological and ecological characteristics, and phylogenetic analyses of sequences of nuclear rDNA regions (5.8S, nuc 18S, nuc 28S) and protein-coding genes (rpb1, rpb2, and tef1). The analyses presented in this study also give strong support for including Jaapia in Gloeophyllaceae and Gloeophyllales. Thus, the names Jaapiaceae and Jaapiales are considered here as synonyms of Gloeophyllaceae and Gloeophyllales. Since Paratrichaptum represents the earliest diverging lineage in Gloeophyllales, pileate basidiocarps and brown rot appear to be ancestral states of Gloeophyllales. Paratrichaptum accuratum may represent a relic species, according to its phylogenetic position, peculiar distribution pattern and rare occurrence.

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