scholarly journals Developing a real-time PCR diagnostic method for a potential threat to chrysanthemum, Paratylenchus dianthus

2019 ◽  
Vol 51 ◽  
pp. 1-11
Author(s):  
Masanori Kawanobe ◽  
Koki Toyota ◽  
Hidehito Uchihara ◽  
Mikoto Takae
2010 ◽  
Vol 126 (1) ◽  
pp. 37-41 ◽  
Author(s):  
Lucia Maďarová ◽  
Katarína Trnková ◽  
Soňa Feiková ◽  
Cyril Klement ◽  
Margita Obernauerová

Nematology ◽  
2017 ◽  
Vol 19 (8) ◽  
pp. 987-1001 ◽  
Author(s):  
Danqiong Huang ◽  
Guiping Yan ◽  
Neil Gudmestad ◽  
Andrea Skantar

The ectoparasitic stubby root nematode,Paratrichodorus allius, transmits tobacco rattle virus, which causes corky ringspot disease resulting in significant economic losses in the potato industry. A diagnostic method for direct quantification ofP. alliusfrom soil DNA using TaqMan probe and SYBR Green real-time PCR assays was developed to assist the potato industry in management of this important vector. Specificity of primers/probe designed from the internal transcribed spacer of ribosomal DNA ofP. alliuswas demonstrated byin silicoanalysis and experimental PCR tests with no cross reactions using non-target nematode species and nematode communities. The SYBR Green method was more sensitive than the TaqMan probe method during detection using serial diluted DNA templates. Standard curves were generated from serial dilutions of DNA extracted from autoclaved soil with artificially inoculatedP. alliusindividuals and were validated by high correlations between the numbers of target nematodes quantified by the assays and added to the soil. Moreover, the numbers ofP. alliusdetermined by the real-time PCR assays and estimated by the microscopic method in 17 field soil samples presented positive correlation relationships (). Although the quantification using TaqMan probe overestimated the target nematodes compared to using SYBR Green in eight out of ten field soil samples, results of the two methods correlated well (). This is the first report ofP. alliusquantification from soil DNA extracts using real-time PCR, providing a rapid and sensitive diagnostic method obviating time-consuming manual nematode extraction from soil and microscopic identification and quantification.


2014 ◽  
Vol 44 (9) ◽  
pp. 1103-1111 ◽  
Author(s):  
Josyanne Lamarche ◽  
Don Stewart ◽  
Gervais Pelletier ◽  
Richard C. Hamelin ◽  
Philippe Tanguay

Eight Ceratocystis Ellis & Halst. species belonging to the Ceratocystis coerulescens complex are pathogens causing blue-stain on Pinaceae. Three of these species, namely C. polonica, C. laricicola, and C. fujiensis, are particularly aggressive and can cause tree mortality. Although currently absent from the North American landscape, they are considered a significant potential threat to the Canadian boreal forest. As they are difficult to distinguish from native North American species belonging to the C. coerulescens complex, we developed a real-time PCR detection test for each of the three species to detect the equivalent of one fungal spore directly from insect vectors. DNA from at least one species of the C. coerulescens complex was detected on 86% of the beetles (Ips typographus (Linnaeus, 1758) and Ips cembrae (Heer, 1836)), whereas C. polonica DNA was detected on 60% of the I. typographus and C. laricicola DNA was detected on 84% of the I. cembrae. Between 20 and 344 225 spore equivalents were detected on the beetle specimens, and no inhibition effect of DNA extract from environmental samples was observed. These molecular detection tools will allow for rapid and reliable detection of C. polonica, C. laricicola, or C. fujiensis, allowing for a rapid implementation of eradication measures in case of introduction into Canada.


Parasitology ◽  
2004 ◽  
Vol 128 (1) ◽  
pp. 15-21 ◽  
Author(s):  
R. FABRE ◽  
A. BERRY ◽  
B. MORASSIN ◽  
J. F. MAGNAVAL

For the diagnosis of imported malaria, optical or immunochromatographic methods are known to be less sensitive and less specific than PCR-based methods, which are conversely more complicated and time-consuming. An original strategy, based upon the sequential use of a multiplex competitive real-time PCR detectingPlasmodium falciparumorPlasmodiumspp. infection, followed by, if necessary, a single real-time PCR for species identification, was therefore performed and then tested versus conventional PCR in routine conditions. Conventional PCR has been used since October 1999 in the Department of Parasitology, University Hospitals in Toulouse, as a 2nd line diagnostic method. Out of 183 patients tested, 48 were found to be harbouring a falciparum infection by conventional microscopy, 60 by conventional PCR and 60 by multiplex competitive real-time PCR. Nine further patients had a non-falciparum infection, and concordant species identifications were obtained by both conventional PCR and single real-time PCR. The major value of PCR-based methods, when compared to microscopical techniques, was to ascertain the negativity of a suspect sample. Moreover, real-time PCR allows simplification of the operating procedure, with a diagnosis being made within 2 h.


2005 ◽  
Vol 147 (9) ◽  
pp. 373-379 ◽  
Author(s):  
F. Zeeh ◽  
P. Kuhnert ◽  
R. Miserez ◽  
M. G. Doherr ◽  
W. Zimmermann

2010 ◽  
Vol 48 (08) ◽  
Author(s):  
A Brodzinski ◽  
F van Bömmel ◽  
B Fülöp ◽  
B Schlosser ◽  
M Biermer ◽  
...  
Keyword(s):  

2011 ◽  
Vol 39 (04) ◽  
pp. 201-204
Author(s):  
A. Griessler ◽  
E. Pirker ◽  
H. Söllner ◽  
J. Segalés ◽  
T. Kekarainen ◽  
...  

Zusammenfassung Gegenstand und Ziel: Das porzine Circovirus Typ 2 (PCV-2) und das Torque-teno-Sus-Virus (TTSuV) sind in schweineproduzierenden Ländern häufig nachzuweisen. Beide Erreger können sowohl horizontal als auch vertikal übertragen werden und Ebersamen könnte ein wichtiges Übertragungsmedium darstellen. Ziel der Studie war die Abklärung der Prävalenz dieser beiden Viren in Samenproben von Ebern. Material und Methoden: Von 100 Ebern einer Besamungsstation wurde jeweils eine Samenprobe mittels quantitativer Real-Time-PCR auf PCV-2 und mittels konventioneller PCR auf TTSuV-1 und TTSuV-2 untersucht. Ergebnisse: Nur bei einem Eber der Rasse Piétrain war ein positives PCV-2-Resultat festzustellen. TTSuV-1 ließ sich in vier Samenproben, TTSuV-2 in fünf Proben nachweisen. Ein Eber wies eine Koinfektion mit beiden TTSuV-Genotypen auf. Alle TTSuV-positiven Proben stammten von Piétrain-Ebern. Schlussfolgerung und klinische Relevanz: In der vorliegenden Studie wurde erstmals in Österreich TTSuV im Samen nachgewiesen. Die Prävalenz sowohl von TTSuV als auch von PCV-2 war gering. Die klinische Relevanz einer gleichzeitigen Kontamination des Samens mit beiden Viren ist nicht klar.


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