1TP5-08 The free energy profile of a nucleosome core particle through the molecular dynamics simulation(The 47th Annual Meeting of the Biophysical Society of Japan)

Annual Meeting ◽

Dynamics Simulation ◽

Energy Profile ◽

Core Particle ◽

Nucleosome Core Particle ◽

Nucleosome Core ◽

1E1400 Free energy profile for binding of ADP to Hsp90 with molecular dynamics simulation(Proteins: Property I,Oral Presentation,The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s27_1 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S27

Author(s):

Kazutomo Kawaguchi ◽

Hiroyuki Takagi ◽

Masashi Iwayama ◽

Megumi Nishimura ◽

Hiroaki Saito ◽

...

Keyword(s):

Molecular Dynamics ◽

Free Energy ◽

Annual Meeting ◽

Oral Presentation ◽

Dynamics Simulation ◽

Energy Profile ◽

Free Energy Profile ◽

Structural flexibility of the nucleosome core particle at atomic resolution studied by molecular dynamics simulation

Biopolymers ◽

10.1002/bip.20690 ◽

2007 ◽

Vol 85 (5-6) ◽

pp. 407-421 ◽

Cited By ~ 59

Author(s):

Danilo Roccatano ◽

Andre Barthel ◽

Martin Zacharias

Keyword(s):

Molecular Dynamics ◽

Dynamics Simulation ◽

Atomic Resolution ◽

Structural Flexibility ◽

Core Particle ◽

Nucleosome Core Particle ◽

Nucleosome Core

1P059 Fluctuation of solvation free energy of globular protein by all-atom molecular dynamics simulation(Protein:Property,The 48th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.50.s29_4 ◽

2010 ◽

Vol 50 (supplement2) ◽

pp. S29

Author(s):

Hiroaki Saito ◽

Kiyoshi Nishikawa ◽

Hidemi Nagao

Keyword(s):

Molecular Dynamics ◽

Free Energy ◽

Annual Meeting ◽

Solvation Free Energy ◽

Globular Protein ◽

Dynamics Simulation ◽

Free Energy Profile of APOBEC3G Protein Calculated by a Molecular Dynamics Simulation

Biology ◽

10.3390/biology1020245 ◽

2012 ◽

Vol 1 (2) ◽

pp. 245-259

Author(s):

Yoshifumi Fukunishi ◽

Saki Hongo ◽

Masami Lintuluoto ◽

Hiroshi Matsuo

Keyword(s):

Molecular Dynamics ◽

Free Energy ◽

Dynamics Simulation ◽

Energy Profile ◽

Free Energy Profile

3P243 Analysis of the photoresponse mechanism of the LOV-HTH system using accelerated molecular dynamics simulation(Photobiology: Vision & Photoreception,Poster,The 52th Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s289_3 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S289

Author(s):

Kokubu Tetsuo ◽

Furuta Tadaomi ◽

Sakurai Minoru

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Dynamics Simulation ◽

Accelerated Molecular Dynamics ◽

1P204 Structure and orientation of hydrating water molecules at phospholipid/water interface revealed by molecular dynamics simulation(13A. Biological & Artificial membrane: Structure & Property,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri ◽

10.2142/biophys.54.s174_6 ◽

2014 ◽

Vol 54 (supplement1-2) ◽

pp. S174

Author(s):

Suyong Re ◽

Wataru Nishima ◽

Tahei Tahara ◽

Yuji Sugita

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Membrane Structure ◽

Dynamics Simulation ◽

Water Molecules ◽

Water Interface ◽

Structure Property ◽

Artificial Membrane ◽

3M1112 Molecular dynamics simulation for the docking process of myosin against an actin filament(Molecular motor4,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s151_5 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S151-S152

Author(s):

Tadashi Masuda

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Actin Filament ◽

Dynamics Simulation ◽

2PT134 Molecular dynamics simulation study of Lys48-linked diubiquitin in compact conformation(The 50th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.52.s127_5 ◽

2012 ◽

Vol 52 (supplement) ◽

pp. S127

Author(s):

Sotaro Fuchigami ◽

Mitsunori Ikeguchi ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

Simulation Study ◽

Dynamics Simulation ◽

Biophysical Society ◽

Compact Conformation

1SK-01 A class library for developing multi-copy, multi-scale molecular dynamics simulation programs(1SK High Performance Computational Approaches to Biological Functions,The 49th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.51.s8_6 ◽

2011 ◽

Vol 51 (supplement) ◽

pp. S8-S9

Author(s):

Tohru Terada ◽

Yasuhiro Matsunaga ◽

Kei Moritsugu ◽

Akinori Kidera

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

High Performance ◽

Dynamics Simulation ◽

Biological Functions ◽

Computational Approaches ◽

Multi Scale ◽

Class Library ◽

3P-041 Multicanonical molecular dynamics simulation of an all-β protein with secondary structure restraints(Protein:Property,The 47th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.49.s157_6 ◽

2009 ◽

Vol 49 (supplement) ◽

pp. S157-S158

Author(s):

Asahiko Nishimura ◽

Tohru Terada ◽

Kentaro Shimizu

Keyword(s):

Molecular Dynamics ◽

Secondary Structure ◽

Annual Meeting ◽

Dynamics Simulation ◽

Β Protein ◽