Over recent years, many modelling approaches have been used to map and monitor both present and potential distribution of species in the context of ecological niche-based conservation, especially in the face of global environmental change. Using different statistical techniques in a built-in geographic information system (GIS), the development of predictive species distribution models has extensively increased. This chapter introduces a geospatial reference to simulation-based approaches of ecological niche models. The chapter discusses various environmental modeling tools and simulation models available in open source domain used by scientific communities. As an effort of this chapter, we focus on the potential of using such experimental models for large-scale ecosystem modelling studies, highlighting opportunities of research, for a variety of bio-geographical applications. It would serve as a basis for beginners in ecology exploring this field of research, who can further contribute and develop such models to better understand the complex field of ecosystem studies.