The phylogenomic landscape of the genus Serratia

The genus Serratia has been studied for over a century and includes clinically-important and diverse environmental members. Despite this, there is a paucity of genomic information across the genus and a robust whole genome-based phylogenetic framework is lacking. Here, we have assembled and analysed a representative set of 664 genomes from across the genus, including 215 historic isolates originally used in defining the genus. Phylogenomic analysis of the genus reveals a clearly-defined population structure which displays deep divisions and aligns with ecological niche, as well as striking congruence between historical biochemical phenotyping data and contemporary genomics data. We show that Serratia is a diverse genus which displays striking plasticity and ability to adapt to its environment, including a highly-varied portfolio of plasmids, and provide evidence of different patterns of gene flow across the genus. This work provides an essential platform for understanding the emergence of clinical and other lineages of Serratia.

Modeling of the Potential Geographical Distribution of Three Fritillaria Species Under Climate Change

Fritillaria species, a well-known Chinese traditional medicine for more than 2,000 years, have become rare resources due to excessive harvesting. In order to balance the economical requirement and ecological protection of Fritillaria species, it is necessary to determine (1) the important environmental variables that were responsible for the spatial distribution, (2) distribution change in response to climate change in the future, (3) ecological niche overlap between various Fritillaria species, and (4) the correlation between spatial distribution and phylogenies as well. In this study, the areas with potential ecological suitability for Fritillaria cirrhosa, Fritillaria unibracteata, and Fritillaria przewalskii were predicted using MaxEnt based on the current occurrence records and bioclimatic variables. The result indicated that precipitation and elevation were the most important environmental variables for the three species. Moreover, the current suitable habitats of F. cirrhosa, F. unibracteata, and F. przewalskii encompassed 681,951, 481,607, and 349,199 km2, respectively. Under the scenario of the highest concentration of greenhouse gas emission (SSP585), the whole suitable habitats of F. cirrhosa and F. przewalskii reach the maximum from 2021 to 2100, while those of F. unibracteata reach the maximum from 2021 to 2100 under the scenario of moderate emission (SSP370) from 2021 to 2100. The MaxEnt data were also used to predict the ecological niche overlap, and thus high overlap occurring among three Fritillaria species was observed. The niche overlap of three Fritillaria species was related to the phylogenetic analysis despite the non-significance (P > 0.05), indicating that spatial distribution was one of the factors that contributed to the speciation diversification. Additionally, we predicted species-specific habitats to decrease habitat competition. Overall, the information obtained in this study provided new insight into the potential distribution and ecological niche of three species for the conservation and management in the future.

The Technological Advance and Application of Coprolite Analysis

Coprolites (mummified or fossilized feces), belonging to the group of ichnofossils, are fossilized remains of feces produced by animals. Various types of data from coprolites provide detailed evidence of the producer’s condition, like diet, intestinal microbiome, virus infection and parasites diseases. In addition, the palaeoenvironment information relevant to producers’ ecological niche can be drawn from taphonomy details the coprolites mirrored. At present, the phylogenetic clues of the producer’s population can be determined by advanced molecular biotechnologies. With the integration of multiple methods and techniques, coprolite has been widely accepted as an ideal material to study the diet, evolution, and palaeoenvironment of producers. In this paper, we reviewed the history of coprolite research, enumerated and interpreted the data recovered from coprolites, and explained their research value to palaeocoprology and evolutionary biology. Finally, we summarized the current directions of coprolite research and looked into its future prospects.

Potential geographic distribution and ecological niche of the insect order Megaloptera: the case of the neartic-neotropical transition zone

The Megaloptera are an interesting, but relatively poorly studied group of insects. Among the new world Megaloptera, it is not known the effect of the neartic-neotropical transition zone on their biogeographic distribution. Here we present potential geographic distributions based on ecological niche models of the species of Megaloptera from North America that occurred in the transition zone. Results suggested that the geographic range of Corydalinae (dobsonflies) in the transition zone is associated to mountainous formations and that most species favour for warm climates with higher precipitation rates. Climate types tend to be important for species that show narrow geographic ranges, but precipitation tends to be the most important variable to explain species dispersion. In addition, Chauliodinae (fishflies) and Sialidae (alderflies) may have no relation with the transition zone. Overall, our models support the dispersion of dobsonflies from the neotropics to North America and explain the two endemisms in Mexico as the result of the formation of the transition zone.

Predicting potential distribution and evaluating biotic interactions of threatened species: a case study of Discocactus ferricola (Cactaceae)

Information on distribution, number of populations, and biotic interactions are essential for assessing the threat status of species and to establish more effective conservation initiatives. Ecological niche modeling have been successfully applied to identify the potential distribution, even for rare species that have few recorded occurrence points. In this study, we evaluated the potential distribution and additionally generated the first data on the reproductive biology of Discocactus ferricola, due to its degree of threat and the absence of ecological data for that species. The potential distribution map highlighted areas with higher probability of occurrence of D. ferricola on the Residual Plateau of Maciço do Urucum located in Mato Grosso do Sul, Brazil. The occurrence of D. ferricola populations was limited to outcrops of flat ironstone (cangas) distributed in patches across the landscape, increasing the chances of serious threats, such as habitat loss due to mining and species extraction. We also found that D. ferricola is xenogamous. Therefore, in situ conservation actions must prioritize the maintenance of interactions with pollinators by preserving the flora and fauna of rocky outcrops and adjacent forests in areas of greater environmental suitability for D. ferricola. Our study highlights the use of ecological niche modeling and data on biotic interactions to evaluate species potential distribution, to guide new sampling efforts, and to assist conservation and management initiatives.