scholarly journals Molecular Dynamics Study for the Base Sequence Recognition Probe of Nucleic Acids Modified with the Pyrenyl Group

2007 ◽  
Vol 6 (4) ◽  
pp. 227-234
Author(s):  
Kazuhiro SASA ◽  
Takeshi UNO ◽  
Haruhisa HAYASHI ◽  
Hidehiko NAKANO
Keyword(s):  
Molecular Dynamics ◽  
Nucleic Acids ◽  
Base Sequence ◽  
Sequence Recognition ◽  
Recognition Probe

scholarly journals Natural and magnetic circular dichroism spectra of nucleosides: effect of the dynamics and environment

RSC Advances ◽  
2021 ◽  
Vol 11 (14) ◽  
pp. 8411-8419
Author(s):  
Jakub Kaminský ◽  
Valery Andrushchenko ◽  
Petr Bouř
Keyword(s):  
Molecular Dynamics ◽  
Circular Dichroism ◽  
Nucleic Acids ◽  
Electronic Absorption ◽  
Magnetic Circular Dichroism ◽  
Circular Dichroism Spectra ◽  
Circular Dichroïsm ◽  
Magnetic Circular Dichroism Spectra

Electronic absorption, natural and magnetic circular dichroism spectra of several nucleosides are simulated to understand their dependence on molecular dynamics and environment, their sensitivity to nucleoside pairing and stacking in nucleic acids.

Molecular investigation of evaporation of biodroplets containing single-strand DNA on graphene surface

2018 ◽  
Vol 20 (7) ◽  
pp. 4936-4952 ◽  
Author(s):  
Fahimeh Akbari ◽  
Masumeh Foroutan
Keyword(s):  
Molecular Dynamics ◽  
Water Droplet ◽  
Md Simulation ◽  
Single Strand ◽  
Base Sequence ◽  
Graphene Surface ◽  
Molecular Investigation ◽  
Different Types

In this study, the water droplet behaviour of four different types of single-strand DNA with homogeneous base sequence on a graphene substrate during evaporation of the droplet was investigated using molecular dynamics (MD) simulation.

Recognition of RNA by Amide Modified Backbone Nucleic Acids:  Molecular Dynamics Simulations of DNA−RNA Hybrids in Aqueous Solution

2005 ◽  
Vol 127 (16) ◽  
pp. 6027-6038 ◽  
Author(s):  
Mafalda Nina ◽  
Raymonde Fonné-Pfister ◽  
Renaud Beaudegnies ◽  
Habiba Chekatt ◽  
Pierre M. J. Jung ◽  
...  
Keyword(s):  
Molecular Dynamics ◽  
Aqueous Solution ◽  
Nucleic Acids ◽  
Molecular Dynamics Simulations ◽  
Dynamics Simulations

ChemInform Abstract: Molecular Dynamics Applied to Nucleic Acids

ChemInform ◽  
2010 ◽  
Vol 33 (37) ◽  
pp. no-no
Author(s):  
Jan Norberg ◽  
Lennart Nilsson
Keyword(s):  
Molecular Dynamics ◽  
Nucleic Acids
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