scholarly journals Novel peptide natural products from the NZ thermophilic microorganism Thermogemmatispora strain T81

2021 ◽  
Author(s):  
◽  
Emma Jayne Aitken

<p><b>Genome mining of the newly described Thermogemmatispora strain T81, a thermophile from the Taupo Volcanic Zone, NZ, revealed the potential to produce novel ribosomally synthesised and post-translationally modified peptide natural products. Previous work established that strain T81 exhibits antimicrobial activity against a wide range of extremophilic bacteria. This thesis describes the mass spectrometry-guided screening of strain T81, and the subsequent isolation and structure elucidation of a novel lanthipeptide, tikitericin (32).</b></p> <p>Tikitericin is a class II lanthipeptide which bears no sequence homology to known lanthipeptides. Comprised of 35 amino acids, the three-dimensional structure of tikitericin is conformationally restricted by four macrocyclic structures formed by the non-proteinogenic residues methyllanthionine and lanthionine. The amino acid sequence, predicted through bioinformatic analysis, was confirmed by chemical degradation experiments and subsequent tandem mass spectrometry. Characterisation of tikitericin’s ring topology was performed by tandem mass spectrometry and stereochemical configuration of the (methyl)lanthionine residues was determined by gas chromatography mass spectrometry.</p>

2021 ◽  
Author(s):  
◽  
Emma Jayne Aitken

<p><b>Genome mining of the newly described Thermogemmatispora strain T81, a thermophile from the Taupo Volcanic Zone, NZ, revealed the potential to produce novel ribosomally synthesised and post-translationally modified peptide natural products. Previous work established that strain T81 exhibits antimicrobial activity against a wide range of extremophilic bacteria. This thesis describes the mass spectrometry-guided screening of strain T81, and the subsequent isolation and structure elucidation of a novel lanthipeptide, tikitericin (32).</b></p> <p>Tikitericin is a class II lanthipeptide which bears no sequence homology to known lanthipeptides. Comprised of 35 amino acids, the three-dimensional structure of tikitericin is conformationally restricted by four macrocyclic structures formed by the non-proteinogenic residues methyllanthionine and lanthionine. The amino acid sequence, predicted through bioinformatic analysis, was confirmed by chemical degradation experiments and subsequent tandem mass spectrometry. Characterisation of tikitericin’s ring topology was performed by tandem mass spectrometry and stereochemical configuration of the (methyl)lanthionine residues was determined by gas chromatography mass spectrometry.</p>


2002 ◽  
Vol 48 (3) ◽  
pp. 533-539 ◽  
Author(s):  
Robert L Taylor ◽  
Ravinder J Singh

Abstract Background: Metanephrines are biochemical markers for tumors of the adrenal medulla (e.g., pheochromocytoma) and other tumors derived from neural crest cells (e.g., paragangliomas and neuroblastomas). We describe a liquid chromatography–tandem mass spectrometry (LC-MS/MS) method for the measurement of urinary conjugated metanephrines. Methods: We added 250 ng of d3-metanephrine (d3-MN) and 500 ng of d3-normetanephrine (d3-NMN) to 1 mL of urine samples as stable isotope internal standards. The samples were then acidified, hydrolyzed for 20 min in a 100 °C water bath, neutralized, and prepared by solid-phase extraction. The methanol eluates were analyzed by LC-MS/MS in the selected-reaction-monitoring mode after separation on a reversed-phase amide C16 column. Results: Multiple calibration curves for the analysis of urine MN and NMN exhibited consistent linearity and reproducibility in the range of 10–5000 μg/L. Interassay CVs were 5.7–8.6% at mean concentrations of 90–4854 μg/L for MN and NMN. The detection limit was 10 μg/L. Recovery of MN and NMN (144–2300 μg/L) added to urine was 91–114%. The regression equation for the LC-MS/MS (x) and colorimetric (y) methods was: y = 0.81x − 0.006 (r = 0.822; n = 110). The equation for the HPLC (x) and LC-MS/MS (y) methods was: y = 1.09x + 0.05 (r = 0.998; n = 40). Conclusions: The sensitivity and specificity of the MS/MS method for urinary conjugated metanephrines offer advantages over colorimetric, immunoassay, HPLC, and gas chromatography–mass spectrometry methods because of elimination of drug interferences, high throughput, and short chromatographic run time.


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