scholarly journals Genome data analysis, protein function and structure prediction by machine learning techniques

2016 ◽  
Author(s):  
Renzhi Cao
2019 ◽  
Vol 13 (S1) ◽  
Author(s):  
Rongjie Wang ◽  
Tianyi Zang ◽  
Yadong Wang

Abstract Background In recent years, with the development of high-throughput genome sequencing technologies, a large amount of genome data has been generated, which has caused widespread concern about data storage and transmission costs. However, how to effectively compression genome sequences data remains an unsolved problem. Results In this paper, we propose a compression method using machine learning techniques (DeepDNA), for compressing human mitochondrial genome data. The experimental results show the effectiveness of our proposed method compared with other on the human mitochondrial genome data. Conclusions The compression method we proposed can be classified as non-reference based method, but the compression effect is comparable to that of reference based methods. Moreover, our method not only have a well compression results in the population genome with large redundancy, but also in the single genome with small redundancy. The codes of DeepDNA are available at https://github.com/rongjiewang/DeepDNA.


Author(s):  
Anitha Kumari K ◽  
Indusha M ◽  
Abarna Devi D ◽  
Dheva Dharshini S

With the advancement of technology, existence of energy meters are not merely to measure energy units. The proliferation of energy meter deployments had led to significant interest in analyzing the energy usage by the machines. Energy meter data is often difficult to analyzeowing to the aggregation of many disparate and complex loads. At utility scales, analysis is further complicated by the vast quantity of data and hence industries turn towards applying machine learning techniques for monitoring and measuring loads of the machines. The energy meter data analysis aims at analyzing the behavior of the machine and providing insights on usage of the energy. This will help the industries to identify the faults in the machine and to rectify it.Two use cases with two different motor specifications is considered for evaluation and the efficiency is proved by considering accuracy, precision, F-measure and recall as metrics.


2018 ◽  
Vol 7 (4.5) ◽  
pp. 168
Author(s):  
Khatri Chandni ◽  
Prof. Mrudang Pandya ◽  
Dr. Sunil Jardosh

In recent years, Machine Learning techniques that are based on Deep Learning networks that show a great promise in research          communities.Successful methods for deep learning involve Artificial Neural Networks and Machine Learning. Deep Learning solves severa  problems in bioinformatics. Protein Structure Prediction is one of the most important fields that can be solving using Deep Learning  approaches.These protein are categorized on basis of occurrence of amino acid patterns occur to extract the feature. In these paper aimed to review work based on protein structure prediction solve using Deep Learning Networks. Objective is to review motivate and facilitatethese deep learn the network for predicting protein sequences using Deep Learning. 


2020 ◽  
Vol 29 (03n04) ◽  
pp. 2060011
Author(s):  
Emna Hachicha Belghith ◽  
François Rioult ◽  
Medjber Bouzidi

During the last years, big data has become the new emerging trend that increasingly attracting the attention of the R&D community in several fields (e.g., image processing, database engineering, data mining, artificial intelligence). Marine data is part of these fields which accommodates this growth, hence the appearance of marine big data paradigm that monitoring advocates the assessment of human impact on marine data. Nonetheless, supporting acoustic sounds classification is missing in such environment, with taking into account the diversity of such data (i.e., sounds of living undersea species, sounds of human activities, and sounds of environmental effects). To overcome this issue, we propose in this paper an approach that efficiently allowing acoustic diversity classification using machine learning techniques. The aim is to reach an automated support of marine big data analysis. We have conducted a set of experiments, using a real marine dataset, in order to validate our approach and show its effectiveness and efficiency. To do so, three machine learning techniques are employed: (i) classic machine learning models (i.e., k-nearest neighbor and support vector machine), (ii) deep learning based on convolutional neural networks, and (iii) transfer learning based on the reuse of pretrained models.


2019 ◽  
Vol 7 (2) ◽  
pp. 41-49 ◽  
Author(s):  
Shakila Basheer ◽  
Usha Devi Gandhi ◽  
Priyan M.K. ◽  
Parthasarathy P.

Machine learning has gained immense popularity in a variety of fields as it has the ability to change the conventional workflow of a process. The abundance of data available serves as the motivation for this. This data can be exploited for a good deal of knowledge. In this article, we focus on operational data of networking devices that are deployed in different locations. This data can be used to predict faults in the devices. Usually, after the deployment of networking devices in customer site, troubleshooting these devices is difficult. Operational data of these devices is needed for this process. Manually analysing the machined produced operational data is tedious and complex due to enormity of data. Using machine learning techniques will be of greater help here as this will help automate the troubleshooting process, avoid human errors and save time for the technical solutions engineers.


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