scholarly journals Comprehensive characterization of Escherichia coli isolated from urine samples of hospitalized patients in Rio de Janeiro, Brazil: the use of next generation sequencing technologies for resistance and virulence profiling and phylogenetic typing

2020 ◽  
Author(s):  
Ana da Cruz Campos
mBio ◽  
2013 ◽  
Vol 4 (1) ◽  
Author(s):  
Fernando Baquero ◽  
Raquel Tobes

ABSTRACT A recent study published in mBio [Y. H. Grad et al., mBio 4(1):e00452-12, 2013] indicates that a rapid introgressive evolution has occurred in Escherichia coli O104:H4 by sequential acquisition of foreign genetic material involving pathogenicity traits. O104 genetic promiscuity cannot be readily explained by high population sizes. However, extensive interactions leading to cumulative assemblies of pathogenicity genes might be assured by small K-strategist populations exploiting particular intestinal niches. Next-generation sequencing technologies will be critical to detect particular “gene cocktails” as potentially pathogenic ensembles and to predict the risk of future outbreaks.


2010 ◽  
Vol 28 (1) ◽  
pp. E6 ◽  
Author(s):  
Paul A. Northcott ◽  
James T. Rutka ◽  
Michael D. Taylor

Advances in the field of genomics have recently enabled the unprecedented characterization of the cancer genome, providing novel insight into the molecular mechanisms underlying malignancies in humans. The application of high-resolution microarray platforms to the study of medulloblastoma has revealed new oncogenes and tumor suppressors and has implicated changes in DNA copy number, gene expression, and methylation state in its etiology. Additionally, the integration of medulloblastoma genomics with patient clinical data has confirmed molecular markers of prognostic significance and highlighted the potential utility of molecular disease stratification. The advent of next-generation sequencing technologies promises to greatly transform our understanding of medulloblastoma pathogenesis in the next few years, permitting comprehensive analyses of all aspects of the genome and increasing the likelihood that genomic medicine will become part of the routine diagnosis and treatment of medulloblastoma.


2018 ◽  
Vol 9 ◽  
Author(s):  
Ana Carolina C. Campos ◽  
Nathália L. Andrade ◽  
Mithila Ferdous ◽  
Monika A. Chlebowicz ◽  
Carla C. Santos ◽  
...  

2020 ◽  
Vol 11 ◽  
Author(s):  
Ana Carolina C. Campos ◽  
Nathália L. Andrade ◽  
Mithila Ferdous ◽  
Monika A. Chlebowicz ◽  
Carla C. Santos ◽  
...  

2016 ◽  
Vol 97 (2) ◽  
pp. 659-668 ◽  
Author(s):  
Agnieszka Piotrowska-Cyplik ◽  
Kamila Myszka ◽  
Jakub Czarny ◽  
Katarzyna Ratajczak ◽  
Ryszard Kowalski ◽  
...  

Author(s):  
Rosa Elena Hernández-Fillor ◽  
Michael Brilhante ◽  
Carelia Martha Marrero-Moreno ◽  
Michel Baez ◽  
Ivette Espinosa ◽  
...  

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