scholarly journals Development of Wheat-Aegilops caudata Introgression Lines and Their Characterization Using Genome-Specific KASP Markers

2020 ◽  
Vol 11 ◽  
Author(s):  
Surbhi Grewal ◽  
Manel Othmeni ◽  
Jack Walker ◽  
Stella Hubbart-Edwards ◽  
Cai-yun Yang ◽  
...  
Author(s):  
Surbhi Grewal ◽  
Manel Othmeni ◽  
Jack Walker ◽  
Stella Hubbart Edwards ◽  
Cai-yun Yang ◽  
...  

ABSTRACTAegilops caudata L. [syn. Ae. markgrafii (Greuter) Hammer], a diploid wild relative of wheat (2n = 2x = 14, CC), is an important source for new genetic variation for wheat improvement due to a variety of disease resistance factors along with tolerance for various abiotic stresses. Its practical utilisation in wheat improvement can be facilitated through the generation of genome-wide introgressions leading to a variety of different wheat–Ae. caudata recombinant lines. In this study, we report the generation of nine such wheat–Ae. caudata recombinant lines which were characterized using wheat genome-specific KASP (Kompetitive Allele Specific PCR) markers and multi-colour genomic in situ hybridization (mcGISH). Of these, six lines have stable homozygous introgressions from Ae. caudata and will be used for future trait analysis. Through a combination of molecular and cytological analysis of all the recombinant lines, we were able to physically map 182 KASP markers onto the seven Ae. caudata chromosomes, of which 155 were polymorphic specifically with only one wheat subgenome. Comparative analysis of the physical positions of these markers in the Ae. caudata and wheat genomes confirmed that the former had chromosomal rearrangements with respect to wheat, as previously reported. These wheat–Ae. caudata recombinant lines and KASP markers provide a useful genetic resource for wheat improvement with the latter having a wider impact as a tool for detection of introgressions from other Aegilops species into wheat.


2021 ◽  
Vol 12 ◽  
Author(s):  
Surbhi Grewal ◽  
Veronica Guwela ◽  
Claire Newell ◽  
Cai-yun Yang ◽  
Stephen Ashling ◽  
...  

Wheat is one of the most important food and protein sources in the world and although, in recent years wheat breeders have achieved yield gains, they are not sufficient to meet the demands of an ever-growing population. Development of high yielding wheat varieties, resilient to abiotic and biotic stress resulting from climate change, has been limited by wheat’s narrow genetic base. In contrast to wheat, the wild relatives of wheat provide a vast reservoir of genetic variation for most, if not all, agronomic traits. Previous studies by the authors have shown the transfer of genetic variation from T. urartu into bread wheat. However, before the introgression lines can be exploited for trait analysis, they are required to have stable transmission of the introgressions to the next generation. In this work, we describe the generation of 86 doubled haploid (DH) wheat-T. urartu introgression lines that carry homozygous introgressions which are stably inherited. The DH lines were characterised using the Axiom® Wheat Relative Genotyping Array and 151 KASP markers to identify 65 unique T. urartu introgressions in a bread wheat background. DH production has helped accelerate the breeding process and facilitated the early release of homozygous wheat-T. urartu introgression lines. Together with the KASP markers, this valuable resource could greatly advance identification of beneficial alleles that can be used in wheat improvement.


2021 ◽  
Author(s):  
Surbhi Grewal ◽  
Benedict Coombes ◽  
Ryan Joynson ◽  
Anthony Hall ◽  
John Fellers ◽  
...  

Many wild relative species are being used in pre-breeding programmes to increase the genetic diversity of wheat. Genotyping tools such as single nucleotide polymorphism (SNP)-based arrays and molecular markers have been widely used to characterise wheat-wild relative introgression lines. However, due to the polyploid nature of the recipient wheat genome, it is difficult to develop SNP-based KASP markers that are codominant to track the introgressions from the wild species. Previous attempts to develop KASP markers have involved both exome- and PCR-amplicon-based sequencing of the wild species. But chromosome-specific KASPs assays have been hindered by homoeologous SNPs within the wheat genome. This study involved whole genome sequencing of the diploid wheat wild relative Amblyopyrum muticum and development of a SNP discovery pipeline that generated ~38,000 SNPs in single-copy wheat genome sequences. New assays were designed to increase the density of Am. muticum polymorphic KASP markers. With a goal of one marker per 60 Mbp, 335 new KASP assays were validated as functional. Together with assays validated in previous studies, 498 well distributed chromosome-specific markers were used to recharacterize previously genotyped wheat-Am. muticum doubled haploid (DH) introgression lines. The chromosome specific nature of the KASP markers allowed clarification of which wheat chromosomes were involved with recombination events or substituted with Am. muticum chromosomes and the higher density of markers allowed detection of new small introgressions in these DH lines.


2016 ◽  
Vol 42 (8) ◽  
pp. 1247
Author(s):  
Xing-Xing ZHANG ◽  
Zhao-Jun WANG ◽  
Yu-Shuang YANG ◽  
Dao-Wen WANG ◽  
Wen- Ming ZHENG ◽  
...  

2013 ◽  
Vol 38 (9) ◽  
pp. 1640-1648 ◽  
Author(s):  
Yong LAI ◽  
Jing-Xia FENG ◽  
Er-Jing SI ◽  
Bao-Chun LI ◽  
Ya-Xiong MENG ◽  
...  
Keyword(s):  

2011 ◽  
Vol 37 (9) ◽  
pp. 1559-1568
Author(s):  
Xiao-Qing GAO ◽  
Xue-Wen XIE ◽  
Mei-Rong XU ◽  
Lei WANG ◽  
Ying-Yao SHI ◽  
...  

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