scholarly journals The Crystal Chemistry of Rathite Based on New Electron-Microprobe Data and Single-Crystal Structure Refinements: The Role of Thallium

Minerals ◽  
2018 ◽  
Vol 8 (10) ◽  
pp. 466
Author(s):  
Dan Topa ◽  
Uwe Kolitsch
Keyword(s):  
Crystal Structure ◽  
Single Crystal ◽  
Crystal Chemistry ◽  
Electron Microprobe ◽  
Mean Value ◽  
Unit Cell ◽  
Complex Spectrum ◽  
Unit Cell Parameters ◽  
Cell Parameters ◽  
Crystal Unit Cell

Crystal-structure refinements in space group P21/c were performed on five grains of rathite with different types and degrees of thallium, silver, and antimony substitutions, as well as quantitative electron-microprobe analyses of more than 800 different rathite samples. The results of these studies both enlarged and clarified the complex spectrum of cation substitutions and the crystal chemistry of rathite. The [Tl+ + As3+] ↔ 2Pb2+ scheme of substitution acts at the structural sites Pb1, Pb2, and Me6, the [Ag+ + As3+] ↔ 2Pb2+ substitution at Me5, and the Sb-for-As substitution at the Me3 site only. The homogeneity range of rathite was determined to be unusually large, ranging from very Tl-poor compositions (0.16 wt%; refined single-crystal unit-cell parameters: a = 8.471(2), b = 7.926(2), c = 25.186(5) Å, β = 100.58(3)°, V = 1662.4(6) Å3) to very Tl-rich compositions (11.78 wt%; a = 8.521(2), b = 8.005(2), c = 25.031(5) Å, β = 100.56(3)°, V = 1678.4(6) Å3). The Ag content is only slightly variable (3.1 wt%–4.1 wt%) with a mean value of 3.6 wt%. The Sb content is strongly variable (0.20 wt%–7.71 wt%) and not correlated with the Tl content. With increasing Tl content (0.16 wt%–11.78 wt%), a clear increase of the unit-cell parameters a, b, and V, and a slight decrease of c is observed, although this is somewhat masked by the randomly variable Sb content. The revised general formula of rathite may be written as AgxTlyPb16−2(x+y)As16+x+y−zSbzS40 (with 1.6 < x < 2, 0 < y < 3, 0 < z < 3.5). Based on Pb–S bond lengths, polyhedral characteristics and Pb-site bond-valence sums, we conclude that the Pb1 site is more affected by Tl substitution than the Pb2 site. When Tl substitution reaches values above 13 wt% (or 3 apfu), a new phase (“SR”), belonging to the rahite group, appears as lamellar exsolution intergrowths with Tl-rich rathite (11.78 wt%). Rathite is found only in the Lengenbach and Reckibach deposits, Binntal, Canton Wallis, Switzerland.

Waimirite-(Y), orthorhombic YF3, a new mineral from the Pitinga mine, Presidente Figueiredo, Amazonas, Brazil and from Jabal Tawlah, Saudi Arabia: description and crystal structure

2015 ◽  
Vol 79 (3) ◽  
pp. 767-780 ◽  
Author(s):  
Daniel Atencio ◽  
Artur C. Bastos Neto ◽  
Vitor P. Pereira ◽  
José T. M. M. Ferron ◽  
M. Hoshino ◽  
...  
Keyword(s):  
Crystal Structure ◽  
Saudi Arabia ◽  
Single Crystal ◽  
Electron Microprobe ◽  
Empirical Formula ◽  
Unit Cell ◽  
New Mineral ◽  
Charge Balance ◽  
Unit Cell Parameters ◽  
Cell Parameters

AbstractWaimirite-(Y) (IMA 2013-108), orthorhombic YF3, occurs associated with halloysite, in hydrothermal veins (up to 30 mm thick) cross-cutting the albite-enriched facies of the A-type Madeira granite (∼1820 Ma), at the Pitinga mine, Presidente Figueiredo Co., Amazonas State, Brazil. Minerals in the granite are 'K-feldspar', albite, quartz, riebeckite, 'biotite', muscovite, cryolite, zircon, polylithionite, cassiterite, pyrochlore-group minerals, 'columbite', thorite, native lead, hematite, galena, fluorite, xenotime-(Y), gagarinite-(Y), fluocerite-(Ce), genthelvite–helvite, topaz, 'illite', kaolinite and 'chlorite'. The mineral occurs as massive aggregates of platy crystals up to ∼1 μm in size. Forms are not determined, but synthetic YF3 displays pinacoids, prisms and bipyramids. Colour: pale pink. Streak: white. Lustre: non-metallic. Transparent to translucent. Density (calc.) = 5.586 g/cm3 using the empirical formula. Waimirite-(Y) is biaxial, mean n = 1.54–1.56. The chemical composition is (average of 24 wavelength dispersive spectroscopy mode electron microprobe analyses, O calculated for charge balance): F 29.27, Ca 0.83, Y 37.25, La 0.19, Ce 0.30, Pr 0.15, Nd 0.65, Sm 0.74, Gd 1.86, Tb 0.78, Dy 8.06, Ho 1.85, Er 6.38, Tm 1.00, Yb 5.52, Lu 0.65, O (2.05), total (97.53) wt.%. The empirical formula (based on 1 cation) is (Y0.69Dy0.08Er0.06Yb0.05Ca0.03Gd0.02Ho0.02Nd0.01Sm0.01Tb0.01Tm0.01Lu0.01)Σ1.00[F2.54〈0.25O0.21]Σ3.00. Orthorhombic, Pnma, a = 6.386(1), b = 6.877(1), c = 4.401(1) Å, V = 193.28(7) Å3, Z = 4 (powder data). Powder X-ray diffraction (XRD) data [d in Å (I) (hkl)]: 3.707 (26) (011), 3.623 (78) (101), 3.438 (99) (020), 3.205 (100) (111), 2.894 (59) (210), 1.937 (33) (131), 1.916 (24) (301), 1.862 (27) (230). The name is for the Waimiri-Atroari Indian people of Roraima and Amazonas. A second occurrence of waimirite-(Y) is described from the hydrothermally altered quartz-rich microgranite at Jabal Tawlah, Saudi Arabia. Electron microprobe analyses gave the empirical formula (Y0.79Dy0.08Er0.05Gd0.03Ho0.02Tb0.01Tm0.01Yb0.01)Σ1.00[F2.85O0.08〈0.07]Σ3.00. The crystal structure was determined with a single crystal from Saudi Arabia. Unit-cell parameters refined from single-crystal XRD data are a = 6.38270(12), b = 6.86727(12), c = 4.39168(8) Å, V = 192.495(6) Å3, Z = 4. The refinement converged to R1 = 0.0173 and wR2 = 0.0388 for 193 independent reflections. Waimirite-(Y) is isomorphous with synthetic SmF3, HoF3 and YbF3. The Y atom forms a 9-coordinated YF9 tricapped trigonal prism in the crystal structure. The substitution of Y for Dy, as well as for other lanthanoids, causes no notable deviations in the crystallographic values, such as unit-cell parameters and interatomic distances, from those of pure YF3.

scholarly journals Lead-antimony sulfosalts from Tuscany (Italy). XIX. Crystal chemistry of chovanite from two new occurrences in the Apuan Alps and its 8 Å crystal structure

2017 ◽  
Vol 81 (4) ◽  
pp. 811-831 ◽  
Author(s):  
Cristian Biagioni ◽  
Yves Moëlo
Keyword(s):  
Crystal Structure ◽  
Oxygen Atom ◽  
Crystal Chemistry ◽  
Electron Microprobe ◽  
Unit Cell ◽  
Unit Cell Parameters ◽  
Space Group ◽  
Cell Parameters ◽  
New Occurrences ◽  
Apuan Alps

AbstractTwo new occurrences of the lead oxy-sulfosalt chovanite have been identified at the Monte Arsiccio and Pollone mines, Apuan Alps, Tuscany, Italy. Chovanite from Monte Arsiccio occurs as black acicular crystals, up to 5 mm long, associated with rouxelite, robinsonite, sphalerite, valentinite,baryte, dolomite, quartz and Ba-rich K-feldspar ('hyalophane') in metadolostone vugs. Its unit-cell parameters are a = 48.38(5), b = 4.11(4), c = 34.18(4) Å, β = 106.26(2)°, V = 6521(64) Å3, space group C2/m. Very weakreflections indicate the doubling of the b parameter. Electron-microprobe data gave (wt.%): Ag 0.28, Tl 1.51, Pb 45.57, Sb 31.00, As 1.09, S 19.73, Se 0.05, Cl 0.02, sum 99.25. On the basis of ∑Me = 58 apfu, its formula is Ag0.30Tl0.86Pb25.56Sb29.59As1.69S71.52Se0.07Cl0.05.Adding one oxygen atom, it is close to the formula TlPb26(Sb,As)31S72O. Chovanite from Pollone occurs as thick black acicular crystals, up to 1 cm long, associated with baryte and quartz. The high-diffraction quality of the available material allowed the solutionand refinement of the 8 Å crystal structure in the space group P21/c, with unit-cell parameters a = 34.052(3), b = 8.2027(7), c = 48.078(4) Å, β = 106.258(4)°, V = 12891.9(19) Å3. The refinement convergedto R1 = 9.14% on the basis of 19,853 observed reflections with Fo > 4σ(Fo). Electron-microprobe data gave (wt.%): Ag 0.12, Tl 0.54, Pb 48.34, Bi 0.20, Sb 26.71, As 3.37, S 20.23, Cl 0.07, sum 99.57. It corresponds to the formulaAg0.13Tl0.30Pb26.94Bi0.10Sb25.33As5.20S72.85Cl0.20, close to the idealized formula Pb28(Sb,As)30S72O, with a single oxygen atom bound to two (Sb/As) atoms alternating witha vacancy along b as in scainiite and in other Pb oxy-sulfosalts. The crystal chemistry of this 8 Å crystal structure is detailed, taking into account its modular description, the (Sb,As)mSn polymerization, its topological derivation from pellouxite,and the oxygen non-stoichiometry.

Redefinition of satimolite

2018 ◽  
Vol 82 (5) ◽  
pp. 1033-1047 ◽  
Author(s):  
Igor V. Pekov ◽  
Natalia V. Zubkova ◽  
Dmitry A. Ksenofontov ◽  
Nikita V. Chukanov ◽  
Vasiliy O. Yapaskurt ◽  
...  
Keyword(s):  
Crystal Structure ◽  
Single Crystal ◽  
Rietveld Method ◽  
Three Dimensional ◽  
Direct Methods ◽  
Salt Dome ◽  
Unit Cell ◽  
Unit Cell Parameters ◽  
Cell Parameters ◽  
Octahedral Clusters

ABSTRACTThe borate mineral satimolite, which was first described in 1969 and remained poorly-studied until now, has been re-investigated (electron microprobe analysis, single-crystal and powder X-ray diffraction studies, crystal-structure determination, infrared spectroscopy) and redefined based on the novel data obtained for the holotype material from the Satimola salt dome and a recently found sample from the Chelkar salt dome, both in North Caspian Region, Western Kazakhstan. The revised idealized formula of satimolite is KNa2(Al5Mg2)[B12O18(OH)12](OH)6Cl4·4H2O (Z = 3). The mineral is trigonal, space group R$\bar{3}$m, unit-cell parameters are: a = 15.1431(8), c = 14.4558(14) Å and V = 2870.8(4) Å3 (Satimola) and a = 15.1406(4), c = 14.3794(9) Å and V = 2854.7(2) Å3 (Chelkar). The crystal system and unit-cell parameters are quite different from those reported previously. The crystal structure of the sample from Chelkar was solved based on single-crystal data (direct methods, R = 0.0814) and the structure of the holotype from Satimola was refined on a powder sample by the Rietveld method (Rp = 0.0563, Rwp = 0.0761 and Rall = 0.0667). The structure of satimolite is unique for minerals. It contains 12-membered borate rings [B12O18(OH)12] in which BO3 triangles alternate with BO2(OH)2 tetrahedra sharing common vertices, and octahedral clusters [M7O6(OH)18] with M = Al5Mg2 in the ideal case, with sharing of corners between rings and clusters to form a three-dimensional heteropolyhedral framework. Each borate ring is connected with six octahedral clusters: three under the ring and three over the ring. Large ellipsoidal cages in the framework host Na and K cations, Cl anions and H2O molecules.

Molecular and crystal structure of a copper(II) complex of sildenafil

2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Akhmatkhodja N. Yunuskhodjayev ◽  
Shokhista F. Iskandarova ◽  
Vahobjon Kh. Sabirov
Keyword(s):  
Crystal Structure ◽  
Single Crystal ◽  
Unit Cell ◽  
Monoclinic Space Group ◽  
X Ray Diffraction ◽  
Unit Cell Parameters ◽  
Piperazine Ring ◽  
Space Group ◽  
X Ray ◽  
Cell Parameters

Abstract The crystal structure of a copper(II) complex of protonated sildenafil, CuCl3C22H31N6O4S⋅2H2O was studied by single crystal X-ray diffraction. The compound crystallizes in the monoclinic space group P21/n with the unit cell parameters a = 15.4292(2), b = 9.06735(12), c = 21.1752(2) Å, V = 2945.48(7) Å3, Z = 4. The Cu atom is coordinated by the sildenafil ligand via the N2 atom of the pyrazolopyrimidine ring and by three chloride anions. Sildenafil is protonated at the methylated N6 atom of the piperazine ring and it is cation ligand with a 1+ charge.

Reactions between Co(II), 1,2-bis(diphenylphosphino)ethane, and NaBH3CN in the presence and absence of CO. The crystal structure of bis(cyanotrihydroborato)tetrakis(N,N-dimethylformamide)cobalt(II)

1988 ◽  
Vol 66 (7) ◽  
pp. 1770-1775 ◽  
Author(s):  
David J. Elliot ◽  
Sanna Haukilahti ◽  
David G. Holah ◽  
Alan N. Hughes ◽  
Stanislaw Maciaszek ◽  
...  
Keyword(s):  
Crystal Structure ◽  
Single Crystal ◽  
Unit Cell ◽  
X Ray Diffraction ◽  
Unit Cell Parameters ◽  
Triclinic Space Group ◽  
Space Group ◽  
X Ray ◽  
Cell Parameters ◽  
R Factor

Reactions between Co(II), Diphos, and NaBH3CN lead to Co(BH3CN)2(Diphos)2, 1, or [Co(BH3CN)(Diphos)2]X, 2 (X = ClO4 or BPh4), and, in certain solvents, 2 reacts to produce [Co(CN)(Diphos)2](ClO4). Compound 1 can be reversibly converted to Co(BH3CN)2(DMF)4, 4, via Co(BH3CN)2(Diphos)(DMF). In addition, 1 reacts with CO to form the Co(I) and Co(III) compounds [Co(Diphos)2](CO)]X and [Co(Diphos)2(CN)2]X (X = BH3CN or BPh4). Single crystal X-ray diffraction studies of 4 show that the compound crystallizes in the triclinic space group [Formula: see text], with unit cell parameters a = 7.572(6), b = 9.695(6), c = 9.395(6) Å, α = 81.06(4), β = 68.46(5), γ = 68.19(5)°, V = 595.5 Å3, Z = 1, and dcalcd = 1.202 g cm−3. The structure converged to a conventional R factor of 0.040 for 2841 observations and showed an octahedral arrangement of four O atoms from DMF molecules and two trans N-bound BH3CN groups around the Co(II) center.

Crystallographic studies of cobalt arsenates. IV. Crystal parameters of cobalt diarsenate

1970 ◽  
Vol 48 (2) ◽  
pp. 388-389 ◽  
Author(s):  
J. Ozog ◽  
N. Krishnamachari ◽  
C. Calvo
Keyword(s):  
Crystal Structure ◽  
Single Crystal ◽  
Unit Cell ◽  
Unit Cell Parameters ◽  
Cell Parameters ◽  
Triclinic Unit Cell ◽  
Measured Density

The crystal structure of cobalt diarsenate has been shown to be a new member of a series of structures closely related to that of the mineral thortveitite. The triclinic unit cell parameters are: a = 6.55 Å, b = 8.52 Å, c = 4.76 Å, α = 91.0°, β = 104.0°, γ = 91.3°. There are 2 molecules per unit cell with a symmetry Cl or [Formula: see text] and a measured density 5.01 g/cm3. The single crystal patterns show nearly the C2/m symmetry characteristic of the mineral thortveitite and its analogues.

scholarly journals Structural Trends and Solid-Solutions Based on the Crystal Chemistry of Two Hausmannite (Mn3O4) Samples from the Kalahari Manganese Field

Minerals ◽  
2019 ◽  
Vol 9 (6) ◽  
pp. 343 ◽  
Author(s):  
Sytle M. Antao ◽  
Laura A. Cruickshank ◽  
Kaveer S. Hazrah
Keyword(s):  
Single Crystal ◽  
Crystal Chemistry ◽  
Structure Refinement ◽  
Site Occupancy ◽  
Unit Cell ◽  
X Ray Diffraction ◽  
Unit Cell Parameters ◽  
X Ray ◽  
Cell Parameters ◽  
Jahn Teller

The crystal chemistry of two hausmannite samples from the Kalahari manganese field (KMF), South Africa, was studied using electron-probe microanalysis (EPMA), single-crystal X-ray diffraction (SCXRD) for sample-a, and high-resolution powder X-ray diffraction (HRPXRD) for sample-b, and a synthetic Mn3O4 (97% purity) sample-c as a reference point. Hausmannite samples from the KMF were reported to be either magnetic or non-magnetic with a general formula AB2O4. The EPMA composition for sample-a is [Mn2+0.88Mg2+0.11Fe2+0.01]Σ1.00Mn3+2.00O4 compared to Mn2+Mn3+2O4 obtained by refinement. The single-crystal structure refinement in the tetragonal space group I41/amd gave R1 = 0.0215 for 669 independently observed reflections. The unit-cell parameters are a = b = 5.7556(6), c = 9.443(1) Å, and V = 312.80(7) Å3. The Jahn–Teller elongated Mn3+O6 octahedron of the M site consists of M–O × 4 = 1.9272(5), M–O × 2 = 2.2843(7), and an average <M–O>[6] = 2.0462(2) Å, whereas the Mn2+O4 tetrahedron of the T site has T–O × 4 = 2.0367(8) Å. The site occupancy factors (sof) are M(sof) = 1.0 Mn (fixed, thereafter) and T(sof) = 1.0008(2) Mn. The EPMA composition for sample-b is [Mn0.99Mg0.01](Mn1.52Fe0.48)O4. The Rietveld refinement gave R (F2) = 0.0368. The unit-cell parameters are a = b = 5.78144(1), c = 9.38346(3) Å, and V = 313.642(1) Å3. The octahedron has M–O × 4 = 1.9364(3), M–O × 2 = 2.2595(6), and average <M–O>[6] = 2.0441(2) Å, whereas T–O × 4 = 2.0438(5) Å. The refinement gave T(sof) = 0.820(9) Mn2+ + 0.180(9) Fe2+ and M(sof) = 0.940(5) Mn3+ + 0.060(5) Fe3+. Samples-a and -b are normal spinels with different amounts of substitutions at the M and T sites. The Jahn–Teller elongation, Δ(M–O), is smaller in sample-b because atom substitutions relieve strain compared to pure Mn3O4.

scholarly journals Crystal chemistry of natural layered double hydroxides. 5. Single-crystal structure refinement of hydrotalcite, [Mg6Al2(OH)16](CO3)(H2O)4

2018 ◽  
Vol 83 (02) ◽  
pp. 269-280 ◽  
Author(s):  
Elena S. Zhitova ◽  
Sergey V. Krivovichev ◽  
Igor Pekov ◽  
H. Christopher Greenwell
Keyword(s):  
Crystal Structure ◽  
Single Crystal ◽  
Crystal Structures ◽  
Structure Refinement ◽  
Unit Cell ◽  
Single Crystal Structure ◽  
Unit Cell Parameters ◽  
Diagnostic Features ◽  
Space Group ◽  
Cell Parameters

AbstractHydrotalcite, ideally [Mg6Al2(OH)16](CO3)(H2O)4, was studied in samples from Dypingdal, Snarum, Norway (3R and 2H), Zelentsovskaya pit (2H) and Praskovie–Evgenievskaya pit (2H) (both Southern Urals, Russia), Talnakh, Siberia, Russia (3R), Khibiny, Kola, Russia (3R), and St. Lawrence, New York, USA (3R and 2H). Two polytypes, 3R and 2H (both ‘classical’), were confirmed on the basis of single-crystal and powder X-ray diffraction data. Their chemical composition was studied by electron-microprobe analysis, infrared spectroscopy, differential scanning calorimetry, and thermogravimetric analysis. The crystal structure of hydrotalcite-3R was solved by direct methods in the space group R$ {\bar 3} $m on three crystals (two data collections at 290 K and one at 120 K). The unit-cell parameters are as follows (290/290/120 K): a = 3.0728(9)/3.0626(3)/3.0617(4), c = 23.326(9)/23.313(3)/23.203(3) Å and V = 190.7(1)/189.37(4)/188.36(4) Å3. The crystal structures were refined on the basis of 304/150/101 reflections to R1 = 0.075/0.041/0.038. Hydrotalcite-2H crystallises in the P63/mmc space group; unit-cell parameters for two crystals are (data collection at 290 K and 93 K): a = 3.046(1)/3.0521(9), c = 15.447(6)/15.439(4) Å, V = 124.39(8)/124.55(8) Å3. The crystal structures were refined on the basis of 160/142 reflections to R1 = 0.077/0.059. This paper reports the first single-crystal structure data on hydrotalcite. Hydrotalcite distribution in Nature, diagnostic features, polytypism, interlayer topology and localisation of M2+–M3+ cations within metal hydroxide layers are discussed.

Synthesis, single-crystal structure determination and Raman spectrum of Ca2.57(4)Sr0.43(4)Cl2[CBN]

2017 ◽  
Vol 72 (3) ◽  
pp. 225-229
Author(s):  
Olaf Reckeweg ◽  
Armin Schulz ◽  
Francis J. DiSalvo
Keyword(s):  
Crystal Structure ◽  
Raman Spectrum ◽  
Solid State ◽  
Single Crystal ◽  
Structure Determination ◽  
Solid State Reaction ◽  
Unit Cell ◽  
Unit Cell Parameters ◽  
Cell Parameters ◽  
Incremental Volume

Abstract Solid-state reaction of Ca, CaCl2, Sr, SrCl2, C and BN at 900°C for 3 days yielded transparent red needles of Ca2.57(4)Sr0.43(4)Cl2[CBN] as minority product (<10%) mixed with crystals of isotypic yellow Ca3Cl2[CBN] and orange Sr3Cl2[CBN]. Ca2.57(4)Sr0.43(4)Cl2[CBN] crystallizes in the space group Pnma (no.62) with the unit cell parameters of a=1389.2(6), b=386.05(15) and c=1131.2(4)pm (Z=4). The Raman spectrum confirms the presence of the [CBN]4− unit. The incremental volume of the [CBN]4− is calculated to be 50.7(10)Å3.

Darstellung und Struktur von NaAu3Si und NaAu3Ge / Preparation and Crystal Structure of NaAu3Si and NaAu3Ge

1980 ◽  
Vol 35 (11) ◽  
pp. 1482-1483 ◽  
Keyword(s):  
Crystal Structure ◽  
Single Crystal ◽  
Diffraction Data ◽  
Ternary Systems ◽  
Unit Cell ◽  
X Ray Diffraction ◽  
Unit Cell Parameters ◽  
X Ray ◽  
Cell Parameters ◽  
New Compounds

Abstract In the course of our investigations of the ternary systems Na-Au-Si(Ge) we obtained the new compounds NaAu3Si and NaAu3Ge. Their crystal structure has been determined from single crystal X-ray diffraction data. They crystallize in the cubic space group Pa 3 with unit cell parameters a = 891,6 pm and a = 902,1 pm, resp., and Z = 8.

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