scholarly journals Typology, Structural Characterization and Sustainability of Integrated Broiler Farming System in Epirus, Greece

2021 ◽  
Vol 13 (23) ◽  
pp. 13084
Author(s):  
Vassilios Dotas ◽  
Dimitrios Gourdouvelis ◽  
Lampros Hatzizisis ◽  
Ioannis Kaimakamis ◽  
Ioannis Mitsopoulos ◽  
...  
Keyword(s):  
Cluster Analysis ◽  
Structural Characterization ◽  
Hierarchical Cluster Analysis ◽  
Financial Management ◽  
Hierarchical Cluster ◽  
Farming System ◽  
Poultry Farms ◽  
Large Farms ◽  
Farm Types

The aim of this study was the detailed characterization of the existing zootechnical and financial management applied in broiler poultry farms in the Region of Epirus, Greece. The current situation was captured through the formation of a typology on the structural characterization of broiler farming system. The variables were recorded based on data from a stratified random sample according to Neyman’s methodology of 110 poultry farms. In the typology, hierarchical cluster analysis was applied to identify differences between farms and to support most of this differentiation. Chebyshev distance was used to maximize the effect of the cluster elements distance, as well as Ward’s clustering method, which aims to achieve greater homogeneity within the clusters. Bonferroni multiple comparison tests were used to evaluate the differences. Four clusters of different farm types were identified from the hierarchical cluster analysis. In conclusion, the production system of broiler farms in Epirus is intensive, especially in large farms that have made significant investments in fixed capital and implement successful management. However, the poultry sector in Epirus has further margin for improvement in both its productivity and profitability.

scholarly journals Ultraviolet Spectroscopy Used to Fingerprint Five Wild-Grown Edible Mushrooms (Boletaceae) Collected from Yunnan, China

2016 ◽  
Vol 2016 ◽  
pp. 1-8 ◽  
Author(s):  
Yan Li ◽  
Ji Zhang ◽  
Tao Li ◽  
Tianwei Yang ◽  
Yuanzhong Wang ◽  
...  
Keyword(s):  
Cluster Analysis ◽  
Discriminant Analysis ◽  
Hierarchical Cluster Analysis ◽  
Visual Discrimination ◽  
Uv Spectroscopy ◽  
Hierarchical Cluster ◽  
Uv Spectra ◽  
Edible Mushrooms ◽  
Ultraviolet Spectroscopy

Nowadays, wild-grown edible mushrooms which are natural, nutritious, and healthy get more and more popular by large consumers. In this paper, UV spectra of different Boletaceae mushrooms with the aid of partial least squares discriminant analysis (PLS-DA) and hierarchical cluster analysis (HCA) were shown to be a practical and rapid method for discrimination purpose. The specimens of Boletus edulis, Boletus ferrugineus, Boletus tomentipes, Leccinum rugosiceps, and Xerocomus sp. were described based on the UV spectra. From the results, all the specimens were characterized by strong absorption at the wavelengths of 274 and 284 nm and showed the shoulder at 296 nm. However, changes could be seen in the peak heights at the same wavelength for different samples. After analyzing by chemometrics, visual discrimination among samples was presented and the relationships among them were also obtained. This study showed that UV spectroscopy combined with chemometrics methods could be used successfully as a simple and effective approach for characterization of these five wild-grown edible mushrooms at species and genus levels. Meanwhile, this rapid and simple methodology could also provide reference for the discrimination of edible mushrooms.

scholarly journals IRAP variability in Prunus domestica (L.) borkh based on Cassandra retrotransposon polymorphism

Genetika ◽  
2017 ◽  
Vol 49 (3) ◽  
pp. 989-1000
Author(s):  
Slavomíra Senková ◽  
Jana Ziarovská ◽  
Eloy Fernández ◽  
Danka Boseľová ◽  
Milan Bezo
Keyword(s):  
Cluster Analysis ◽  
Length Polymorphism ◽  
Hierarchical Cluster Analysis ◽  
Dna Markers ◽  
Hierarchical Cluster ◽  
Prunus Domestica ◽  
Genomic Variability ◽  
Plum Varieties ◽  
Insertional Polymorphism

Plum species are reported to possess a wide genomic variability and that is why DNA markers are still actual in the characterization of its germlasm. In this study, twenty-three genotypes of European plums were assessed for the amplified length based polymorphism among the retrotransposon Cassandra insertions in their genomes. The obtained insertional polymorphism caused by the activity of Cassandra showed regional and pedigree differences in the analysed accessions of European plums. Two primers were used in analysis. The first resulted in the amplification in 203 amplicons and the 86.6 % polymorphism. Two unique fragments were obtained for the Torysa and Podol?nec varieties using this primer. The second primer resulted in the amplification in 267 amplicons and 74.2 % polymorphism. Four unique fragments were obtained for the plum varieties Svestka dom?c?, Cacansk? rann? and Elena. Hierarchical cluster analysis divided the analysed accessions into the four main clusters. To show the length polymorphism diferences of the analysed genotypes from Germany, Slovakia and former Yugoslavia more pecisely, the scattergram for them was constructed.

Comprehensive Molecular Characterization of Malignant and Microenvironmental Cells in Waldenstrom’s Macroglobulinemia by Gene Expression Profiling.

Blood ◽  
2007 ◽  
Vol 110 (11) ◽  
pp. 3174-3174 ◽  
Author(s):  
Evdoxia Hatjiharissi ◽  
Constantine S. Mitsiades ◽  
Ciccarelli T. Bryan ◽  
Xu Lian ◽  
Cao Yang ◽  
...  
Keyword(s):  
Gene Expression ◽  
Cluster Analysis ◽  
Gene Expression Profiling ◽  
Molecular Characterization ◽  
Hierarchical Cluster Analysis ◽  
Expression Profiling ◽  
Mononuclear Cells ◽  
Hierarchical Cluster ◽  
Healthy Donors

Abstract Waldenstrom’s Macroglobulinemia (WM) is an incurable B-cell malignancy characterized by bone marrow (BM) infiltration with a spectrum of clonally related cells, including small lymphocytes and lymphoplasmacytic cells (CD19+) as well as mature plasma cells (CD138+). The molecular pathogenesis of the disease remains to be defined. We therefore analyzed the gene expression profiles of CD19+ and CD138+ BM mononuclear cells from 30 untreated patients with WM and compared their gene expression profile to their normal counterparts from 10 healthy donors using Affymetrix microarrays (U133 plus 2.0). Since the microenvironment plays an important role in the pathogenesis of WM, we also profiled and compared gene expression profiling for CD19 and CD138 depleted BM mononuclear cells from the same patients and healthy donors. Gene expression analysis was performed using dChip software. Unsupervised hierarchical cluster analysis demonstrated distinct gene expression patterns between WM cells versus their normal counterparts. In supervised hierarchical cluster analysis selecting for genes with > 2 fold change in expression and a False discovery Rate (FDR) < 2%, a set of 1171, 582 and 360 genes were found to be differentially expressed between WM patient and healthy donor CD19+, CD138+, as well as CD19/CD138 depleted (microenvironmental) cells, respectively. Among the most significantly over-expressed genes in the CD19+ compartment in WM patients were: BCL2, TNFRSF13B, TNFRSF17, IGLL1, CCR2, CLLU1, whilst the AP1 family genes JUND and FOSB were among the most significantly down-regulated genes in both CD19+ and CD138+ cells in WM patients. Other interesting transcripts which were over-expressed in CD138+ cells from WM patients included those from genes involved in transcription regulation (ZKSCAN1, ZMYM1, ZNF189, ZNF19, and ZNF559) and interferon response (IFI16 and IFIH1). Of considerable interest was our observation that microenvironmental cells in WM patients demonstrated an overactive transcriptional profile composed of genes which are associated with immune and inflammatory responses including the Toll like receptors (TLR 1,5,7,8), interferon and cytokines (IFI16, IFNAR1, IL-10R, IL-8R), genes encoding extracellular matrix components (Fibronectin and Hepatocyte Growth Factor) as well as genes involved in apoptotic signaling (TNFSF10, TRAF4). These studies provide the first comprehensive molecular characterization of WM, dissecting the molecular features of the two immunophenotypically distinct populations of malignant cells, and providing for the first time evidence for a distinct molecular profile in BM microenviromental cells.

Characterization of bottled mineral waters marketed in Poland using hierarchical cluster analysis

2014 ◽  
Vol 143 ◽  
pp. 136-145 ◽  
Author(s):  
Aleksander Astel ◽  
Rajmund Michalski ◽  
Aleksandra Łyko ◽  
Magdalena Jabłońska-Czapla ◽  
Katarzyna Bigus ◽  
...  
Keyword(s):  
Cluster Analysis ◽  
Hierarchical Cluster Analysis ◽  
Hierarchical Cluster ◽  
Mineral Waters

Extraordinary circumstances: Covid-19 – Italian Serie A scenario

2021 ◽  
pp. 175433712110192
Author(s):  
Milan Radojicic ◽  
Aleksandar Djokovic ◽  
Nikola Cvetkovic
Keyword(s):  
Cluster Analysis ◽  
Hierarchical Cluster Analysis ◽  
Hierarchical Cluster ◽  
Round Robin ◽  
The Past ◽  
Novel Approach ◽  
Round Robin Tournaments

Unpredictable and uncontrollable situations have happened throughout history. Inevitably, such situations have an impact on various spheres of life. The coronavirus disease 2019 has affected many of them, including sports. The ban on social gatherings has caused the cancellation of many sports competitions. This paper proposes a methodology based on hierarchical cluster analysis (HCA) that can be applied when a need occurs to end an interrupted tournament and the conditions for playing the remaining matches are far from ideal. The proposed methodology is based on how to conclude the season for Serie A, a top-division football league in Italy. The analysis showed that it is reasonable to play 14 instead of the 124 remaining matches of the 2019–2020 season to conclude the championship. The proposed methodology was tested on the past 10 seasons of the Serie A, and its effectiveness was confirmed. This novel approach can be used in any other sport where round-robin tournaments exist.

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