Faculty Opinions recommendation of C. elegans mutant identification with a one-step whole-genome-sequencing and SNP mapping strategy.

Author(s):  
Thorsten Hoppe ◽  
Alexandra Segref
PLoS ONE ◽  
2010 ◽  
Vol 5 (11) ◽  
pp. e15435 ◽  
Author(s):  
Maria Doitsidou ◽  
Richard J. Poole ◽  
Sumeet Sarin ◽  
Henry Bigelow ◽  
Oliver Hobert

PLoS ONE ◽  
2008 ◽  
Vol 3 (12) ◽  
pp. e4012 ◽  
Author(s):  
Yufeng Shen ◽  
Sumeet Sarin ◽  
Ye Liu ◽  
Oliver Hobert ◽  
Itsik Pe'er

2008 ◽  
Vol 5 (2) ◽  
pp. 183-188 ◽  
Author(s):  
LaDeana W Hillier ◽  
Gabor T Marth ◽  
Aaron R Quinlan ◽  
David Dooling ◽  
Ginger Fewell ◽  
...  

PLoS ONE ◽  
2010 ◽  
Vol 5 (11) ◽  
pp. e13922 ◽  
Author(s):  
Katherine P. Weber ◽  
Subhajyoti De ◽  
Iwanka Kozarewa ◽  
Daniel J. Turner ◽  
M. Madan Babu ◽  
...  

2021 ◽  
Author(s):  
Donald G. Moerman ◽  
Erica Li-Leger ◽  
Stephane Flibotte ◽  
Ralf Schnabel ◽  
Heinke Holzkamp ◽  
...  

It has been estimated that 15-30% of the ~20,000 genes in C. elegans are essential, yet many of these genes remain to be identified or characterized. With the goal of identifying unknown essential genes, we performed whole genome sequencing on complementation pairs from legacy collections of maternal-effect lethal and sterile mutants. This approach uncovered maternal genes required for embryonic development and genes with putative sperm-specific functions. In total, 58 essential genes were identified on chromosomes III, IV, and V, of which 49 genes are represented by novel alleles in this collection. Of these 49 genes, 19 (40 alleles) were selected for further functional characterization. The terminal phenotypes of embryos were examined, revealing defects in cell division, morphogenesis, and osmotic integrity of the eggshell. Mating assays with wild-type males revealed previously unknown male-expressed genes required for fertilization and embryonic development. The result of this study is a catalogue of mutant alleles in essential genes that will serve as a resource to guide further study toward a more complete understanding of this important model organism. As many genes and developmental pathways in C. elegans are conserved and essential genes are often linked to human disease, uncovering the function of these genes may also provide insight to further our understanding of human biology.


Author(s):  
Tao Li ◽  
Hye Kyung Chung ◽  
Papa K. Pireku ◽  
Brett F. Beitzel ◽  
Mark A. Sanborn ◽  
...  

The long-lasting global COVID-19 pandemic demands timely genomic investigation of SARS-CoV-2 viruses. Here we report a simple and efficient workflow for whole genome sequencing utilizing one-step RT-PCR amplification on a microfluidic platform, followed by MiSeq amplicon sequencing. The method uses Fluidigm Integrated Fluidic Circuit (IFC) and instruments to amplify 48 samples with 39 pairs of primers, including 35 custom designed primer pairs and four additional primer pairs from the ARTIC network protocol v3. Application of this method on RNA samples from both viral isolate and clinical specimens demonstrate robustness and efficiency of this method in obtaining the full genome sequence of SARS-CoV-2.


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