scholarly journals Sedum formosanum subsp. miyakojimense (Crassulaceae), a new subspecies from Miyako-jima Island of the Ryukyu Islands, Japan

PhytoKeys ◽  
2020 ◽  
Vol 148 ◽  
pp. 51-70
Author(s):  
Takuro Ito ◽  
Chih-Chieh Yu ◽  
Masatsugu Yokota ◽  
Goro Kokubugata
Keyword(s):  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
The Other ◽  
Ryukyu Islands ◽  
Morphological Comparison ◽  
Molecular Analyses ◽  
New Subspecies ◽  
The Ryukyu Islands ◽  
Molecular Phylogenetic ◽  
Axillary Branches

We re-examined the taxonomic status of plants treated as Sedum formosanum (Crassulaceae) from Miyako-jima Island of the Ryukyu Islands, Japan, using morphological comparison and molecular phylogenetic analyses with related species. In morphology, plants from Miyako-jima Island bore a close resemblance to the other plants of S. formosanum, but differed in being perennial, polycarpic, and having lateral axillary branches. Molecular analyses based on ITS of nrDNA and six regions of cpDNA sequencing indicated that the Miyako-jima plants formed a distinct subclade. This subclade was part of a polytomy with three other subclades comprising nine taxa endemic to Taiwan and S. formosanum from other areas, including the type locality. Therefore, we propose and describe the Miyako-jima plants as a new subspecies, Sedum formosanum subsp. miyakojimense.

Afroboletus sequestratus (Boletales), the first species with sequestrate basidioma in the genus

Phytotaxa ◽  
2017 ◽  
Vol 305 (1) ◽  
pp. 11 ◽  
Author(s):  
LI-HONG HAN ◽  
BART BUYCK ◽  
NOUROU S. YOROU ◽  
ROY E. HALLING ◽  
ZHU L. YANG
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
The Other ◽  
Morphological Description ◽  
Sem Images ◽  
Morphological Comparison ◽  
Line Drawings ◽  
Molecular Phylogenetic ◽  
A New Species

A new species of Afroboletus, namely A. sequestratus, is described from Zambia. Evidence from molecular phylogenetic analyses using sequences rpb1, rpb2 and tef1α and morphological comparison support its placement in Afroboletus and it is distinct from the other related members of this genus in Africa. It is the first species with sequestrate basidiomata in the genus. A morphological description is augmented with line drawings and SEM images for the species.

scholarly journals Integrative taxonomy reveals multiple lineages of the spider genus Cybaeus endemic to the Ryukyu Islands, Japan (Arachnida : Araneae : Cybaeidae)

2021 ◽  
Author(s):  
Yoh Ihara ◽  
Naoki Koike ◽  
Takafumi Nakano
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Mitochondrial Gene ◽  
The Other ◽  
Ryukyu Islands ◽  
Yakushima Island ◽  
Gene Markers ◽  
Japanese Archipelago ◽  
The Ryukyu Islands ◽  
The Japanese Archipelago

The epigean spiders of the genus Cybaeus L. Koch, 1868 are known to have diversified in western North America and the Japanese Archipelago. To date, ~80 species of Cybaeus are known from Japan, but they have not previously been recorded from the Ryukyu Islands that harbour a diversity of endemic species. Here we describe eight new species of Cybaeus from the Ryukyu Islands, extending the range of Cybaeus southward to the central Ryukyus. Both sexes of each of the new species are described, and their phylogenetic relationships are estimated using nuclear and mitochondrial gene markers. Although Cybaeus okumurai, sp. nov. and C. kumadori, sp. nov. possess genital features that are common in the other Japanese congeners, the other six species (C. yakushimensis, sp. nov., C. kodama, sp. nov., C. amamiensis, sp. nov., C. aikana, sp. nov., C. tokunoshimensis, sp. nov., and C. hikidai, sp. nov.) are characterised by an elongated embolus and tubular spermathecae. These unique genital characteristics and the phylogeny recovered here suggest that these features evolved independently among the Japanese and Ryukyu Cybaeus species. Phylogenetic analyses highlight an unusual biogeographical pattern in which C. yakushimensis and C. kodama endemic to Yakushima Island in the northern Ryukyus are related to species distributed in the central Ryukyus. In contrast, our phylogeny suggests that C. okumurai from Tanegashima Island in the northern Ryukyus is sister to C. ashikitaensis (Komatsu, 1968), distributed in Kyushu of the Japanese Archipelago. The retreat constructs and sympatric distribution of Cybaeus found among the Ryukyus are also briefly discussed. ZooBank: urn:lsid:zoobank.org:pub:640D15AA-17F4-48EE-88B4-485CFF8FCD60

scholarly journals Molecular phylogenetic assessment of Spirobranchus kraussii-complex (Annelida: Serpulidae) from the Japanese Archipelago

PeerJ ◽  
2021 ◽  
Vol 9 ◽  
pp. e11746
Author(s):  
Genki Kobayashi ◽  
Ryutaro Goto
Keyword(s):  
Genetic Difference ◽  
Phylogenetic Analyses ◽  
Mitochondrial Gene ◽  
Taxonomic Status ◽  
Distinct Species ◽  
Nucleotide Sequences ◽  
The Other ◽  
Its2 Region ◽  
Rrna Gene ◽  
Molecular Phylogenetic

Spirobranchus kraussii (Annelida: Serpulidae) was recognized as being widely distributed both in the Pacific and Atlantic Oceans. However, the sampling records far from its type locality (South Africa) have been questioned. Actually, recent molecular phylogenetic studies showed that S. kraussii contains genetically distinct species. In this study, we performed molecular phylogenetic analyses of S. cf. kraussii collected from Japan using the nucleotide sequences of a mitochondrial gene and two nuclear genes. Three lineages were recovered within Spirobranchus kraussii-complex in Japan, and one (Spirobranchus sp. 6) showed moderate genetic difference (approximately 4%) in the mitochondrial cytb gene sequence from Spirobranchus sp. 1, an undescribed sequenced species from Honshu Island, Japan. However, the nucleotide sequences of the 18S rRNA gene and ITS2 region were nearly indistinguishable. The other lineage was clearly distinct from the other previously sequenced species and is thus considered to be another distinct species of this species complex (Spirobranchus sp. 5). Although detailed morphological assessment of these lineages is necessary to define their taxonomic status, the present study provided further implications for the species diversity within the S. kraussii-complex.

scholarly journals Recircumscription of Bredia and resurrection of Tashiroea (Sonerileae, Melastomataceae) with description of a new species T. villosa

PhytoKeys ◽  
2019 ◽  
Vol 127 ◽  
pp. 121-150 ◽  
Author(s):  
Qiu-Jie Zhou ◽  
Jin-Hong Dai ◽  
Che-Wei Lin ◽  
Tetsuo Denda ◽  
Ren-Chao Zhou ◽  
...  
Keyword(s):  
New Species ◽  
Leaf Surface ◽  
Phylogenetic Analyses ◽  
Mainland China ◽  
Morphological Evidence ◽  
Ryukyu Islands ◽  
Diagnostic Features ◽  
The Ryukyu Islands ◽  
Molecular Phylogenetic ◽  
A New Species

Bredia (Melastomataceae) is an Asian genus that extends from central and southern mainland China to Taiwan and the Ryukyu islands. Molecular phylogenetic analyses reveal that the type of Bredia is nested in a clade of 20 species, while Tashiroea, a genus previously synonymized in Bredia, falls in another distantly related clade of 10 species. Our morphological survey shows that the two clades can be distinguished by several diagnostic features including leaf indumentum, texture, leaf surface sculpture under SEM, presence/absence of yellowish uniseriate trichomes, and capsule morphology. Based on molecular and morphological evidence, Bredia is recircumscribed and Tashiroea is resurrected. Description and a list of species are provided for the two genera with the description of a new species, T.villosa.

A description of the second species of the genus Bleptus Eaton, 1885 (Ephemeroptera: Heptageniidae) from Japan, and phylogenetic relationships of two Bleptus mayflies inferred from mitochondrial and nuclear gene sequences

Zootaxa ◽  
2021 ◽  
Vol 4974 (2) ◽  
pp. 333-360
Author(s):  
KOJI TOJO ◽  
KEN MIYAIRI ◽  
YUTO KATO ◽  
AYANA SAKANO ◽  
TOMOYA SUZUKI
Keyword(s):  
Phylogenetic Analyses ◽  
Ribosomal Subunit ◽  
Nuclear Gene ◽  
Taxonomic Status ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Gene Sequences ◽  
Molecular Phylogenetic ◽  
Black Band ◽  
Relationship Of

A new mayfly species, Bleptus michinokuensis sp. nov. (Ephemeroptera: Heptageniidae) is described on the basis of specimens of male and female adults and mature nymphs collected at a seepage zone of a small freshwater branch of the ‘Tachiya-zawa-gawa’ River located amongst the northern foothills of Mt. Gassan (Shonai-machi Town, Yamagata Prefecture, Japan). This new Bleptus species is characterized by its clear fore and hind wings. That is, they neither exhibit the distinct black band on the fore wings, nor the characteristic darkened margins along the edges of both the fore and hind wings. Rather it has a blackish colored terminal half of its fore legs (i.e., tibial, tarsal and pretarsal segments). These features differ clearly when comparing them to the other known species, Bleptus fasciatus Eaton. The information and data describing the habitat and distribution range of this new species are also noted. We also examined and discussed the genetic relationship of two Bleptus mayflies to settle the taxonomic status, inferred from the partially sequenced cytochrome c oxidase subunit I (COI) and large mitochondrial ribosomal subunit (16S rRNA) genes, and also the nuclear internal transcribed spacer 2 (ITS2) gene sequences. Consequently, phenetic and molecular phylogenetic analyses agreed well in terms of clustering. 

The enigmatic groundwater amphipod Awacaris kawasawai revisited: synonymisation of the genus Sternomoera, with molecular phylogenetic analyses of Awacaris and Sternomoera species (Crustacea : Amphipoda : Pontogeneiidae)

2017 ◽  
Vol 31 (2) ◽  
pp. 125 ◽  
Author(s):  
Ko Tomikawa ◽  
Masaki Kyono ◽  
Keiko Kuribayashi ◽  
Takafumi Nakano
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
28S Rrna ◽  
Ancestral State ◽  
Cryptic Diversity ◽  
Japanese Archipelago ◽  
Molecular Phylogenetic ◽  
The Japanese Archipelago ◽  
Kochi Prefecture

Amphipod crustaceans are dominant in subterranean habitats, and members of eight genera are endemic to groundwater environments in the Japanese Archipelago. The taxonomic status of two of these genera remains unclear, because their original descriptions were incomplete. The descriptions of the enigmatic subterranean monotypic genus Awacaris and its type species, A. kawasawai Uéno, 1971, are revisited here. Awacaris kawasawai was originally described based on specimens from a subterranean stream at Himise Cave, Tokushima Prefecture, Shikoku, Japan. Recently, a new population of A. kawasawai was found at Saruta Cave, Kochi Prefecture, Shikoku. Detailed observation of the newly collected specimens reveals the presence of sternal gills, which is the diagnostic character of the pontogeneiid genus Sternomoera, making the validity of Sternomoera open to question. Phylogenetic analyses using nuclear 28S rRNA and mitochondrial cytochrome c oxidase subunit I markers demonstrate that A. kawasawai forms a well-supported clade with the subterranean S. morinoi Tomikawa and Ishimaru, 2014. In addition, phylogenetic analysis reveals cryptic diversity in epigean species of Sternomoera. Ancestral state reconstruction suggests that catadromous Sternomoera species have evolved from freshwater ancestors. Based on our morphological and phylogenetic analysis of Awacaris and Sternomoera species, it is concluded here that Sternomoera should be treated as a subjective junior synonym of Awacaris.

The Phylogenetic Position of Crenea in the Lythraceae Based on Molecular Evidence, and the Transfer of Its Two Species to Ammannia

2021 ◽  
Vol 106 ◽  
pp. 325-339
Author(s):  
Shirley A. Graham ◽  
Peter W. Inglis ◽  
Taciana B. Cavalcanti
Keyword(s):  
Morphological Character ◽  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Phylogenetic Position ◽  
Molecular Evidence ◽  
Monophyletic Lineage ◽  
The Family ◽  
Mangrove Vegetation ◽  
Molecular Phylogenetic ◽  
Globally Distributed

Crenea Aubl. (Lythraceae) is a ditypic genus of subshrubs occurring in mangrove vegetation on the coasts of northern South America. Phylogenetic analyses based on morphology have offered unresolved and conflicting phylogenetic positions for the genus in the family. This study presents the first molecular sequences for Crenea, from nrITS, rbcL, trnL, trnL-F, and matK regions. Molecular phylogenetic analyses find full support for Crenea within Ammannia L., a relationship not previously recognized. Ammannia is a globally distributed genus of terrestrial to amphibious herbs mostly occurring in freshwater marshes and wetlands. It was recently reconfigured based on phylogenetic evidence to include the genera Nesaea Comm. ex Kunth and Hionanthera A. Fern. & Diniz. The transfer of Crenea to Ammannia further extends the morphological, ecological, and biogeographical diversity of Ammannia and provides the final evidence defining Ammannia as a monophyletic lineage of the Lythraceae. A revised circumscription of Ammannia s.l. adds several new morphological character states and the first species in the genus restricted to mangrove vegetation. Two changes in taxonomic status are made: Ammannia maritima (Aubl.) S. A. Graham, P. W. Inglis, & T. B. Cavalc., comb. nov., and Ammannia patentinervius (Koehne) S. A. Graham, P. W. Inglis, & T. B. Cavalc., comb. nov. The new combinations are described, a list of exsiccatae examined is provided, and the effects of the reconfiguration to the morphology and biogeography of the genus are detailed.

NOTES ON CYRTANDRA (GESNERIACEAE) FROM JAPAN, TAIWAN AND BATAN ISLAND (PHILIPPINES)

2019 ◽  
Vol 76 (3) ◽  
pp. 333-344
Author(s):  
K. Nishii ◽  
G. Kokubugata ◽  
M. Möller ◽  
H. J. Atkins
Keyword(s):  
Ryukyu Islands ◽  
The Ryukyu Islands ◽  
Molecular Phylogenetic

As part of ongoing molecular phylogenetic work on the large Gesneriaceae genus Cyrtandra, new insights into the taxonomy and relationships of the Cyrtandra of Japan, Taiwan and Batan Island in the northern Philippines have emerged. Cyrtandra umbellifera is confirmed as a species with a distribution that includes both Taiwan and Batan Island. Cyrtandra yaeyamae is found to be distinct from the widespread C. cumingii, with a distribution that includes both the Ryukyu Islands in Japan and Batan Island.

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