Subspace Clustering of DNA Microarray Data

Biotechnology ◽  
2019 ◽  
pp. 210-264
Author(s):  
Alain B. Tchagang ◽  
Fazel Famili ◽  
Youlian Pan

Identification of biological significant subspace clusters (biclusters and triclusters) of genes from microarray experimental data is a very daunting task that emerged, especially with the development of high throughput technologies. Several methods and applications of subspace clustering (biclustering and triclustering) in DNA microarray data analysis have been developed in recent years. Various computational and evaluation methods based on diverse principles were introduced to identify new similarities among genes. This review discusses and compares these methods, highlights their mathematical principles, and provides insight into the applications to solve biological problems.

Author(s):  
Alain B. Tchagang ◽  
Fazel Famili ◽  
Youlian Pan

Identification of biological significant subspace clusters (biclusters and triclusters) of genes from microarray experimental data is a very daunting task that emerged, especially with the development of high throughput technologies. Several methods and applications of subspace clustering (biclustering and triclustering) in DNA microarray data analysis have been developed in recent years. Various computational and evaluation methods based on diverse principles were introduced to identify new similarities among genes. This review discusses and compares these methods, highlights their mathematical principles, and provides insight into the applications to solve biological problems.


2013 ◽  
pp. 513-551 ◽  
Author(s):  
Alain B. Tchagang ◽  
Youlian Pan ◽  
Fazel Famili ◽  
Ahmed H. Tewfik ◽  
Panayiotis V. Benos

In this chapter, different methods and applications of biclustering algorithms to DNA microarray data analysis that have been developed in recent years are discussed and compared. Identification of biological significant clusters of genes from microarray experimental data is a very daunting task that emerged, especially with the development of high throughput technologies. Various computational and evaluation methods based on diverse principles were introduced to identify new similarities among genes. Mathematical aspects of the models are highlighted, and applications to solve biological problems are discussed.


Author(s):  
Alain B. Tchagang ◽  
Youlian Pan ◽  
Fazel Famili ◽  
Ahmed H. Tewfik ◽  
Panayiotis V. Benos

In this chapter, different methods and applications of biclustering algorithms to DNA microarray data analysis that have been developed in recent years are discussed and compared. Identification of biological significant clusters of genes from microarray experimental data is a very daunting task that emerged, especially with the development of high throughput technologies. Various computational and evaluation methods based on diverse principles were introduced to identify new similarities among genes. Mathematical aspects of the models are highlighted, and applications to solve biological problems are discussed.


2007 ◽  
Vol 131 (1) ◽  
pp. 34-44 ◽  
Author(s):  
Takashi Hirasawa ◽  
Katsunori Yoshikawa ◽  
Yuki Nakakura ◽  
Keisuke Nagahisa ◽  
Chikara Furusawa ◽  
...  

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