scholarly journals Segmentation of Brain Tumors Using Three-Dimensional Convolutional Neural Network on MRI Images 3D MedImg-CNN

We consider the problem of fully automatic brain tumor segmentation in MR images containing glioblastomas. We propose a three Dimensional Convolutional Neural Network (3D MedImg-CNN) approach which achieves high performance while being extremely efficient, a balance that existing methods have struggled to achieve. Our 3D MedImg-CNN is formed directly on the raw image modalities and thus learn a characteristic representation directly from the data. We propose a new cascaded architecture with two pathways that each model normal details in tumors. Fully exploiting the convolutional nature of our model also allows us to segment a complete cerebral image in one minute. The performance of the proposed 3D MedImg-CNN with CNN segmentation method is computed using dice similarity coefficient (DSC). In experiments on the 2013, 2015 and 2017 BraTS challenges datasets; we unveil that our approach is among the most powerful methods in the literature, while also being very effective.

2020 ◽  
Vol 15 (2) ◽  
pp. 94-108
Author(s):  
R. Kala ◽  
P. Deepa

Background: Accurate detection of brain tumor and its severity is a challenging task in the medical field. So there is a need for developing brain tumor detecting algorithms and it is an emerging one for diagnosis, planning the treatment and outcome evaluation. Materials and Methods: Brain tumor segmentation method using deep learning classification and multi-modal composition has been developed using the deep convolutional neural networks. The different modalities of MRI such as T1, flair, T1C and T2 are given as input for the proposed method. The MR images from the different modalities are used in proportion to the information contents in the particular modality. The weights for the different modalities are calculated blockwise and the standard deviation of the block is taken as a proxy for the information content of the block. Then the convolution is performed between the input image of the T1, flair, T1C and T2 MR images and corresponding to the weight of the T1, flair, T1C, and T2 images. The convolution is summed between the different modalities of the MR images and its corresponding weight of the different modalities of the MR images to obtain a new composite image which is given as an input image to the deep convolutional neural network. The deep convolutional neural network performs segmentation through the different layers of CNN and different filter operations are performed in each layer to obtain the enhanced classification and segmented spatial consistency results. The analysis of the proposed method shows that the discriminatory information from the different modalities is effectively combined to increase the overall accuracy of segmentation. Results: The proposed deep convolutional neural network for brain tumor segmentation method has been analysed by using the Brain Tumor Segmentation Challenge 2013 database (BRATS 2013). The complete, core and enhancing regions are validated with Dice Similarity Coefficient and Jaccard similarity index metric for the Challenge, Leaderboard, and Synthetic data set. To evaluate the classification rates, the metrics such as accuracy, precision, sensitivity, specificity, under-segmentation, incorrect segmentation and over segmentation also evaluated and compared with the existing methods. Experimental results exhibit a higher degree of precision in the segmentation compared to existing methods. Conclusion: In this work, deep convolution neural network with different modalities of MR image are used to detect the brain tumor. The new input image was created by convoluting the input image of the different modalities and their weights. The weights are determined using the standard deviation of the block. Segmentation accuracy is high with efficient appearance and spatial consistency. The assessment of segmented images is completely evaluated by using well-established metrics. In future, the proposed method will be considered and evaluated with other databases and the segmentation accuracy results should be analysed with the presence of different kind of noises.


2018 ◽  
Vol 2018 ◽  
pp. 1-14 ◽  
Author(s):  
Shaoguo Cui ◽  
Lei Mao ◽  
Jingfeng Jiang ◽  
Chang Liu ◽  
Shuyu Xiong

Brain tumors can appear anywhere in the brain and have vastly different sizes and morphology. Additionally, these tumors are often diffused and poorly contrasted. Consequently, the segmentation of brain tumor and intratumor subregions using magnetic resonance imaging (MRI) data with minimal human interventions remains a challenging task. In this paper, we present a novel fully automatic segmentation method from MRI data containing in vivo brain gliomas. This approach can not only localize the entire tumor region but can also accurately segment the intratumor structure. The proposed work was based on a cascaded deep learning convolutional neural network consisting of two subnetworks: (1) a tumor localization network (TLN) and (2) an intratumor classification network (ITCN). The TLN, a fully convolutional network (FCN) in conjunction with the transfer learning technology, was used to first process MRI data. The goal of the first subnetwork was to define the tumor region from an MRI slice. Then, the ITCN was used to label the defined tumor region into multiple subregions. Particularly, ITCN exploited a convolutional neural network (CNN) with deeper architecture and smaller kernel. The proposed approach was validated on multimodal brain tumor segmentation (BRATS 2015) datasets, which contain 220 high-grade glioma (HGG) and 54 low-grade glioma (LGG) cases. Dice similarity coefficient (DSC), positive predictive value (PPV), and sensitivity were used as evaluation metrics. Our experimental results indicated that our method could obtain the promising segmentation results and had a faster segmentation speed. More specifically, the proposed method obtained comparable and overall better DSC values (0.89, 0.77, and 0.80) on the combined (HGG + LGG) testing set, as compared to other methods reported in the literature. Additionally, the proposed approach was able to complete a segmentation task at a rate of 1.54 seconds per slice.


This paper presents brain tumor detection and segmentation using image processing techniques. Convolutional neural networks can be applied for medical research in brain tumor analysis. The tumor in the MRI scans is segmented using the K-means clustering algorithm which is applied of every scan and the feed it to the convolutional neural network for training and testing. In our CNN we propose to use ReLU and Sigmoid activation functions to determine our end result. The training is done only using the CPU power and no GPU is used. The research is done in two phases, image processing and applying neural network.


2021 ◽  
Author(s):  
Ritu Lahoti ◽  
Sunil Kumar Vengalil ◽  
Punith B Venkategowda ◽  
Neelam Sinha ◽  
Vinod Veera Reddy

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