The gating mechanism of the bacterial mechanosensitive channel MscL revealed by molecular dynamics simulations

Gating Mechanism ◽

1P-030 Analysis of Tension Sensing Sites of E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations(The 46th Annual Meeting of the Biophysical Society of Japan)

Seibutsu Butsuri ◽

10.2142/biophys.48.s25_4 ◽

2008 ◽

Vol 48 (supplement) ◽

pp. S25

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Annual Meeting ◽

E Coli ◽

Biophysical Society ◽

2P158 Molecular Dynamics Simulations of Mechano-Gating in the E-coli Mechanosensitive Channel MscL(34. Membrane protein,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)

Seibutsu Butsuri ◽

10.2142/biophys.46.s335_2 ◽

2006 ◽

Vol 46 (supplement2) ◽

pp. S335

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

Membrane Protein ◽

Poster Session ◽

E Coli ◽

Meeting Program ◽

Decoding the structural events in substrate-gating mechanism of eukaryotic prolyl oligopeptidase using normal mode analysis and molecular dynamics simulations

Proteins Structure Function and Bioinformatics ◽

10.1002/prot.24511 ◽

2014 ◽

Vol 82 (7) ◽

pp. 1428-1443 ◽

Cited By ~ 13

Author(s):

Swati Kaushik ◽

Catherine Etchebest ◽

Ramanathan Sowdhamini

Keyword(s):

Molecular Dynamics ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

Prolyl Oligopeptidase ◽

Gating Mechanism ◽

The Gating Mechanism of a P2X4 Receptor: Normal Mode Analysis and Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2011.11.1850 ◽

2012 ◽

Vol 102 (3) ◽

pp. 337a-338a

Author(s):

Juan Du ◽

Hao Dong ◽

Huan Xiang Zhou

Keyword(s):

Molecular Dynamics ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

P2x4 Receptor ◽

Gating Mechanism ◽

A Novel Gating Mechanism of the NaVMs Selectivity Filter Suggested by Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2013.11.770 ◽

2014 ◽

Vol 106 (2) ◽

pp. 131a

Author(s):

Song Ke ◽

Anna Stary-Weinzinger

Keyword(s):

Molecular Dynamics ◽

Selectivity Filter ◽

Gating Mechanism ◽

Membrane Partitioning of Mechanosensitive Channel Inhibitor GsMTx4: Characterization by Depth-Dependent Fluorescence Quenching and Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2008.12.3233 ◽

2009 ◽

Vol 96 (3) ◽

pp. 611a ◽

Cited By ~ 1

Author(s):

Yevgen O. Posokhov

Keyword(s):

Molecular Dynamics ◽

Fluorescence Quenching ◽

Membrane Partitioning ◽

Gating mechanism of a P2X4 receptor developed from normal mode analysis and molecular dynamics simulations

Proceedings of the National Academy of Sciences ◽

10.1073/pnas.1119546109 ◽

2012 ◽

Vol 109 (11) ◽

pp. 4140-4145 ◽

Cited By ~ 39

Author(s):

J. Du ◽

H. Dong ◽

H.-X. Zhou

Keyword(s):

Molecular Dynamics ◽

Normal Mode ◽

Normal Mode Analysis ◽

Mode Analysis ◽

P2x4 Receptor ◽

Gating Mechanism ◽

Asymmetric CorA Gating Mechanism as Observed by Molecular Dynamics Simulations

Journal of Chemical Information and Modeling ◽

10.1021/acs.jcim.1c00261 ◽

2021 ◽

Author(s):

Mariia Nemchinova ◽

Josef Melcr ◽

Tsjerk A. Wassenaar ◽

Siewert J. Marrink ◽

Albert Guskov

Keyword(s):

Molecular Dynamics ◽

Gating Mechanism ◽

Analysis of Gating Process Associated with Water Permeation of the E-coli Mechanosensitive Channel MscL Using Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2008.12.1253 ◽

2009 ◽

Vol 96 (3) ◽

pp. 254a

Author(s):

Yasuyuki Sawada ◽

Masaki Murase ◽

Masahiro Sokabe

Keyword(s):

Molecular Dynamics ◽

E Coli ◽

Water Permeation ◽

Dynamics Simulations ◽

Gating Process

The Gating Mechanism of Yeast Aquaporin Studied by Molecular Dynamics Simulations

Biophysical Journal ◽

10.1016/j.bpj.2009.12.1216 ◽

2010 ◽

Vol 98 (3) ◽

pp. 225a

Author(s):

Gerhard Fischer ◽

Urszula Kosinska-Eriksson ◽

Camilo Aponte-Santamaria ◽

Madelene Palmgren ◽

Cecilia Geijer ◽

...

Keyword(s):

Molecular Dynamics ◽

Gating Mechanism ◽