scholarly journals RNA-mediated chaperone type for de novo protein folding

RNA Biology ◽  
2009 ◽  
Vol 6 (1) ◽  
pp. 21-24 ◽  
Author(s):  
Seong Il Choi ◽  
Kisun Ryu ◽  
Baik L. Seong
Keyword(s):  
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Sandra J. Fries ◽  
Theresa S. Braun ◽  
Christoph Globisch ◽  
Christine Peter ◽  
Malte Drescher ◽  
...  

AbstractThe eukaryotic ribosome-associated complex (RAC) plays a significant role in de novo protein folding. Its unique interaction with the ribosome, comprising contacts to both ribosomal subunits, suggests a RAC-mediated coordination between translation elongation and co-translational protein folding. Here, we apply electron paramagnetic resonance (EPR) spectroscopy combined with site-directed spin labeling (SDSL) to gain deeper insights into a RAC–ribosome contact affecting translational accuracy. We identified a local contact point of RAC to the ribosome. The data provide the first experimental evidence for the existence of a four-helix bundle as well as a long α-helix in full-length RAC, in solution as well as on the ribosome. Additionally, we complemented the structural picture of the region mediating this functionally important contact on the 40S ribosomal subunit. In sum, this study constitutes the first application of SDSL-EPR spectroscopy to elucidate the molecular details of the interaction between the 3.3 MDa translation machinery and a chaperone complex.


2018 ◽  
Vol 114 (3) ◽  
pp. 677a
Author(s):  
John M. Jumper ◽  
Karl F. Freed ◽  
Tobin R. Sosnick
Keyword(s):  

2012 ◽  
Vol 13 (8) ◽  
pp. 10368-10386 ◽  
Author(s):  
Seong Il Choi ◽  
Ahyun Son ◽  
Keo-Heun Lim ◽  
Hotcherl Jeong ◽  
Baik L. Seong
Keyword(s):  

2010 ◽  
Vol 189 (1) ◽  
pp. 69-81 ◽  
Author(s):  
Véronique Albanèse ◽  
Stefanie Reissmann ◽  
Judith Frydman

Molecular chaperones assist cellular protein folding as well as oligomeric complex assembly. In eukaryotic cells, several chaperones termed chaperones linked to protein synthesis (CLIPS) are transcriptionally and physically linked to ribosomes and are implicated in protein biosynthesis. In this study, we show that a CLIPS network comprising two ribosome-anchored J-proteins, Jjj1 and Zuo1, function together with their partner Hsp70 proteins to mediate the biogenesis of ribosomes themselves. Jjj1 and Zuo1 have overlapping but distinct functions in this complex process involving the coordinated assembly and remodeling of dozens of proteins on the ribosomal RNA (rRNA). Both Jjj1 and Zuo1 associate with nuclear 60S ribosomal biogenesis intermediates and play an important role in nuclear rRNA processing, leading to mature 25S rRNA. In addition, Zuo1, acting together with its Hsp70 partner, SSB (stress 70 B), also participates in maturation of the 35S rRNA. Our results demonstrate that, in addition to their known cytoplasmic roles in de novo protein folding, some ribosome-anchored CLIPS chaperones play a critical role in nuclear steps of ribosome biogenesis.


2017 ◽  
Vol 372 (1726) ◽  
pp. 20160214 ◽  
Author(s):  
Nathan H. Joh ◽  
Gevorg Grigoryan ◽  
Yibing Wu ◽  
William F. DeGrado

Ion transporters and channels are able to identify and act on specific substrates among myriads of ions and molecules critical to cellular processes, such as homeostasis, cell signalling, nutrient influx and drug efflux. Recently, we designed Rocker, a minimalist model for Zn 2+ /H + co-transport. The success of this effort suggests that de novo membrane protein design has now come of age so as to serve a key approach towards probing the determinants of membrane protein folding, assembly and function. Here, we review general principles that can be used to design membrane proteins, with particular reference to helical assemblies with transport function. We also provide new functional and NMR data that probe the dynamic mechanism of conduction through Rocker. This article is part of the themed issue ‘Membrane pores: from structure and assembly, to medicine and technology’.


ACS Omega ◽  
2017 ◽  
Vol 2 (6) ◽  
pp. 2977-2984 ◽  
Author(s):  
Axel W. Fischer ◽  
David M. Anderson ◽  
Maxx H. Tessmer ◽  
Dara W. Frank ◽  
Jimmy B. Feix ◽  
...  

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