Integrating mineral interactions with organic carbon in thawing permafrost to assess climate feedbacks

Author(s):  
Sophie Opfergelt ◽  
Catherine Hirst ◽  
Arthur Monhonval ◽  
Elisabeth Mauclet ◽  
Maxime Thomas

<p>Permafrost contains 1400-1660 Gt of organic carbon (OC), from which 5-15% will likely be emitted as greenhouse gases (GHG) by 2100. The soil organic carbon stock is distributed between a pool of particulate organic matter (POM), and a pool of mineral-associated OM (MOM). POM can be free, i.e., more readily available for microbial decomposition, or occluded within soil aggregates (involving clay minerals or Fe-Al (hydr)oxides), i.e., spatially inaccessible for microorganisms. MOM includes OC sorbed onto mineral surfaces (such as clay minerals or Fe-oxides) and OC complexed with metal cations (e.g., Al, Fe, Ca), i.e., stabilized OC. The interactions between OC and minerals influence the accessibility of OC for microbial decomposition and OC stability and are therefore a factor in controlling the C emissions rate upon thawing permafrost.</p><p>In the warming Arctic, there is growing evidence for soil disturbance such as coastal erosion, thermokarst and soil drainage as a consequence of abrupt and gradual permafrost thaw. These disturbances induce changes in the physico-chemical conditions controlling mineral solubility in permafrost soils which directly affect the stability of the MOM and of the occluded POM. As a consequence, a portion of OC can be unlocked and transferred into the free POM. This additional pool of freely available OC may be degraded and amplify C emissions from permafrost to the atmosphere. Conversely, the concomitant release of metal cations upon permafrost thaw may partly mitigate permafrost C emissions by stabilization of OC via complexation or sorption onto mineral surfaces and return a portion of freely available OC to the MOM. The majority of C is emitted as CO<sub>2</sub> but 1.5 and 3.5% of the total permafrost C emissions will be released as CH<sub>4</sub>, with implications for the atmospheric radiative forcing balance. Importantly, the proportion CH<sub>4</sub> emitted relative to CO<sub>2</sub> is likely to increase with increasing abrupt thaw and associated anoxic conditions, but a portion of CH<sub>4</sub> emissions could be mitigated by the anoxic oxidation of methane mediated by the presence of Fe-oxides exposed by abrupt thaw of deep permafrost.</p><p>This contribution aims at assessing how changing soil physico-chemical conditions affect interactions between mineral surfaces and OC in thawing permafrost. Scenarios of mineral-organic interactions during gradual thaw, including changes in water drainage and talik formation, and abrupt thaw including shifting redox conditions associated with thermokarst will be presented. Approaches to quantify changes in mineral-organic interactions will be discussed. By integrating the most recent studies from the permafrost carbon community with soil mineralogy, soil chemistry and soil hydrology, this contribution demonstrates that the fate of mineral-organic interactions upon thawing must be considered given their potential implications for GHG emissions. If we do not include the role of mineral-organic interactions in this puzzle, the complexities involved in soil carbon decomposition may propagate large uncertainties into coupled soil carbon-climate feedback predictions.</p>

Life ◽  
2018 ◽  
Vol 8 (4) ◽  
pp. 59 ◽  
Author(s):  
Ulysse Pedreira-Segade ◽  
Jihua Hao ◽  
Angelina Razafitianamaharavo ◽  
Manuel Pelletier ◽  
Virginie Marry ◽  
...  

Adsorption of prebiotic building blocks is proposed to have played a role in the emergence of life on Earth. The experimental and theoretical study of this phenomenon should be guided by our knowledge of the geochemistry of the habitable early Earth environments, which could have spanned a large range of settings. Adsorption being an interfacial phenomenon, experiments can be built around the minerals that probably exhibited the largest specific surface areas and were the most abundant, i.e., phyllosilicates. Our current work aims at understanding how nucleotides, the building blocks of RNA and DNA, might have interacted with phyllosilicates under various physico-chemical conditions. We carried out and refined batch adsorption studies to explore parameters such as temperature, pH, salinity, etc. We built a comprehensive, generalized model of the adsorption mechanisms of nucleotides onto phyllosilicate particles, mainly governed by phosphate reactivity. More recently, we used surface chemistry and geochemistry techniques, such as vibrational spectroscopy, low pressure gas adsorption, X-ray microscopy, and theoretical simulations, in order to acquire direct data on the adsorption configurations and localization of nucleotides on mineral surfaces. Although some of these techniques proved to be challenging, questioning our ability to easily detect biosignatures, they confirmed and complemented our pre-established model.


Ecosystems ◽  
2014 ◽  
Vol 18 (1) ◽  
pp. 16-29 ◽  
Author(s):  
Amy Lyttle ◽  
Kyungsoo Yoo ◽  
Cindy Hale ◽  
Anthony Aufdenkampe ◽  
Stephen D. Sebestyen ◽  
...  

Author(s):  
V. L. Shannon ◽  
E. I. Vanguelova ◽  
J. I. L. Morison ◽  
L. J. Shaw ◽  
J. M. Clark

AbstractDeadwood forms a significant carbon pool in forest systems and is a potential source of dissolved organic carbon (DOC) input to soil, yet little is known about how deadwood effects forest soil carbon cycling. Deadwood DOC inputs to soil may be retained through sorption or may prime microbial decomposition of existing organic matter to produce additional DOC. To determine impacts of deadwood on soil C cycling, we analysed surface soil from beneath deadwood or leaf litter only, along chronosequences of stands of lowland oak and upland Sitka spruce. The concentration and quality (by optical indices) of water-extracted soil DOC (water-extractable organic carbon; WEOC), in situ decomposition ‘tea bag index’ (TBI) parameters and enzymatic potential assays (β-D-cellubiosidase, β-glucosidase, β-xylosidase, leucine aminopeptidase, phosphatase, phenol oxidase) were determined. Presence of deadwood significantly (p < 0.05) increased WEOC concentration (~ 1.5 to ~ 1.75 times) in the mineral oak soil but had no effect on WEOC in spruce soils, potentially because spruce deadwood DOC inputs were masked by a high background of WEOC (1168 mg kg−1 soil) and/or were not retained through mineral sorption in the highly organic (~ 90% SOM) soil. TBI and enzyme evidence suggested that deadwood-derived DOC did not impact existing forest carbon pools via microbial priming, possibly due to the more humified/aromatic quality of DOC produced (humification index of 0.75 and 0.65 for deadwood and leaf litter WEOC, respectively). Forest carbon budgets, particularly those for mineral soils, may underestimate the quantity of DOC if derived from soil monitoring that does not include a deadwood component.


Soil Systems ◽  
2022 ◽  
Vol 6 (1) ◽  
pp. 2
Author(s):  
Maria Nikishina ◽  
Leonid Perelomov ◽  
Yury Atroshchenko ◽  
Evgenia Ivanova ◽  
Loik Mukhtorov ◽  
...  

In real soils the interaction of humic substances with clay minerals often occurs with the participation of metal cations. The adsorption of fulvic acids (FA) solution and their solutions in the presence of heavy metal ions (Pb or Zn) on two clay minerals (kaolinite and bentonite) was investigated by measurement of the optical density changes in the of equilibrium solutions. The FA adsorption by bentonite at the concentrations 0.05–1 g/L proceeds according to the polymolecular mechanism and has a stepwise character. The adsorption of FA on kaolinite can be described by the mechanism of monomolecular adsorption. In three-component systems, including FA, trace element ions and a clay mineral, complex processes occur, including the formation of complexes and salts and their adsorption. The sorption of colored complexes of FA with Pb on the surface of kaolinite and bentonite increases with increasing metal concentrations (0.5–2 mmol/L). The interaction of the FA-Zn2+ compounds with bentonite is a more complicated process—adsorption takes place at the lowest concentration used only. Thus, binding of FA by clay minerals in the presence of metal cations is a complex phenomenon due to the chemical heterogeneity of FA, different properties of metals, characteristics of mineral surfaces and the variability of environmental conditions.


2020 ◽  
Author(s):  
Thibault Duteil ◽  
et al.

AFM and cryo-SEM images of clay-EPS experiments, FTIR spectra of clay-EPS experiments, physico-chemical properties of standard clay minerals, potential mechanisms of interaction between EPS and mineral surfaces, and a list of of FTIR absorption bands in Figure 2.<br>


2020 ◽  
Author(s):  
Thibault Duteil ◽  
et al.

AFM and cryo-SEM images of clay-EPS experiments, FTIR spectra of clay-EPS experiments, physico-chemical properties of standard clay minerals, potential mechanisms of interaction between EPS and mineral surfaces, and a list of of FTIR absorption bands in Figure 2.<br>


Author(s):  
J. Thieme ◽  
J. Niemeyer ◽  
P. Guttman

In soil science the fraction of colloids in soils is understood as particles with diameters smaller than 2μm. Clay minerals, aquoxides of iron and manganese, humic substances, and other polymeric materials are found in this fraction. The spatial arrangement (microstructure) is controlled by the substantial structure of the colloids, by the chemical composition of the soil solution, and by thesoil biota. This microstructure determines among other things the diffusive mass flow within the soils and as a result the availability of substances for chemical and microbiological reactions. The turnover of nutrients, the adsorption of toxicants and the weathering of soil clay minerals are examples of these surface mediated reactions. Due to their high specific surface area, the soil colloids are the most reactive species in this respect. Under the chemical conditions in soils, these minerals are associated in larger aggregates. The accessibility of reactive sites for these reactions on the surface of the colloids is reduced by this aggregation. To determine the turnover rates of chemicals within these aggregates it is highly desirable to visualize directly these aggregation phenomena.


2000 ◽  
Vol 42 (10-11) ◽  
pp. 371-374 ◽  
Author(s):  
S. Araki ◽  
J. M. González ◽  
E. de Luis ◽  
E. Bécares

The viability of Parascaris equorum eggs was studied in two experimental pilot-scale high-rate algal ponds (HRAPs) working in parallel with 4 and 10 days hydraulic retention time respectively. Semi-permeable bags of cellulose (15000 daltons pore size) were used to study the effect of physico-chemical conditions on the survival of these helminth eggs. Three thousand eggs were used in each bag. Replicates of these bags were submerged for 4 and 10 days in the HRAPs and egg viability was compared with that in control bags submerged in sterile water. After 4 days exposure, 60% reduction in viability was achieved, reaching 90% after 10 days, much higher than the 16% and 25% found in the control bags for 4 and 10 days respectively. Ionic conditions of the HRAP may have been responsible for up to 50–60% of the egg mortality, suggesting that mortality due to the ionic environment could be more important than physical retention and other potential removal factors.


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