scholarly journals How do Nucleotides Adsorb Onto Clays?

Life ◽  
2018 ◽  
Vol 8 (4) ◽  
pp. 59 ◽  
Author(s):  
Ulysse Pedreira-Segade ◽  
Jihua Hao ◽  
Angelina Razafitianamaharavo ◽  
Manuel Pelletier ◽  
Virginie Marry ◽  
...  

Adsorption of prebiotic building blocks is proposed to have played a role in the emergence of life on Earth. The experimental and theoretical study of this phenomenon should be guided by our knowledge of the geochemistry of the habitable early Earth environments, which could have spanned a large range of settings. Adsorption being an interfacial phenomenon, experiments can be built around the minerals that probably exhibited the largest specific surface areas and were the most abundant, i.e., phyllosilicates. Our current work aims at understanding how nucleotides, the building blocks of RNA and DNA, might have interacted with phyllosilicates under various physico-chemical conditions. We carried out and refined batch adsorption studies to explore parameters such as temperature, pH, salinity, etc. We built a comprehensive, generalized model of the adsorption mechanisms of nucleotides onto phyllosilicate particles, mainly governed by phosphate reactivity. More recently, we used surface chemistry and geochemistry techniques, such as vibrational spectroscopy, low pressure gas adsorption, X-ray microscopy, and theoretical simulations, in order to acquire direct data on the adsorption configurations and localization of nucleotides on mineral surfaces. Although some of these techniques proved to be challenging, questioning our ability to easily detect biosignatures, they confirmed and complemented our pre-established model.

2020 ◽  
Author(s):  
Sophie Opfergelt ◽  
Catherine Hirst ◽  
Arthur Monhonval ◽  
Elisabeth Mauclet ◽  
Maxime Thomas

<p>Permafrost contains 1400-1660 Gt of organic carbon (OC), from which 5-15% will likely be emitted as greenhouse gases (GHG) by 2100. The soil organic carbon stock is distributed between a pool of particulate organic matter (POM), and a pool of mineral-associated OM (MOM). POM can be free, i.e., more readily available for microbial decomposition, or occluded within soil aggregates (involving clay minerals or Fe-Al (hydr)oxides), i.e., spatially inaccessible for microorganisms. MOM includes OC sorbed onto mineral surfaces (such as clay minerals or Fe-oxides) and OC complexed with metal cations (e.g., Al, Fe, Ca), i.e., stabilized OC. The interactions between OC and minerals influence the accessibility of OC for microbial decomposition and OC stability and are therefore a factor in controlling the C emissions rate upon thawing permafrost.</p><p>In the warming Arctic, there is growing evidence for soil disturbance such as coastal erosion, thermokarst and soil drainage as a consequence of abrupt and gradual permafrost thaw. These disturbances induce changes in the physico-chemical conditions controlling mineral solubility in permafrost soils which directly affect the stability of the MOM and of the occluded POM. As a consequence, a portion of OC can be unlocked and transferred into the free POM. This additional pool of freely available OC may be degraded and amplify C emissions from permafrost to the atmosphere. Conversely, the concomitant release of metal cations upon permafrost thaw may partly mitigate permafrost C emissions by stabilization of OC via complexation or sorption onto mineral surfaces and return a portion of freely available OC to the MOM. The majority of C is emitted as CO<sub>2</sub> but 1.5 and 3.5% of the total permafrost C emissions will be released as CH<sub>4</sub>, with implications for the atmospheric radiative forcing balance. Importantly, the proportion CH<sub>4</sub> emitted relative to CO<sub>2</sub> is likely to increase with increasing abrupt thaw and associated anoxic conditions, but a portion of CH<sub>4</sub> emissions could be mitigated by the anoxic oxidation of methane mediated by the presence of Fe-oxides exposed by abrupt thaw of deep permafrost.</p><p>This contribution aims at assessing how changing soil physico-chemical conditions affect interactions between mineral surfaces and OC in thawing permafrost. Scenarios of mineral-organic interactions during gradual thaw, including changes in water drainage and talik formation, and abrupt thaw including shifting redox conditions associated with thermokarst will be presented. Approaches to quantify changes in mineral-organic interactions will be discussed. By integrating the most recent studies from the permafrost carbon community with soil mineralogy, soil chemistry and soil hydrology, this contribution demonstrates that the fate of mineral-organic interactions upon thawing must be considered given their potential implications for GHG emissions. If we do not include the role of mineral-organic interactions in this puzzle, the complexities involved in soil carbon decomposition may propagate large uncertainties into coupled soil carbon-climate feedback predictions.</p>


1990 ◽  
Vol 39 (442) ◽  
pp. 996-1000 ◽  
Author(s):  
Ayao TAKASAKA ◽  
Hideyuki NEMOTO ◽  
Hirohiko KONO ◽  
Yoshihiro MATSUDA

2019 ◽  
Author(s):  
Patricia Scheurle ◽  
Andre Mähringer ◽  
Andreas Jakowetz ◽  
Pouya Hosseini ◽  
Alexander Richter ◽  
...  

Recently, a small group of metal-organic frameworks (MOFs) has been discovered featuring substantial charge transport properties and electrical conductivity, hence promising to broaden the scope of potential MOF applications in fields such as batteries, fuel cells and supercapacitors. In combination with light emission, electroactive MOFs are intriguing candidates for chemical sensing and optoelectronic applications. Here, we incorporated anthracene-based building blocks into the MOF-74 topology with five different divalent metal ions, that is, Zn2+, Mg2+, Ni2+, Co2+ and Mn2+, resulting in a series of highly crystalline MOFs, coined ANMOF-74(M). This series of MOFs features substantial photoluminescence, with ANMOF-74(Zn) emitting across the whole visible spectrum. The materials moreover combine this photoluminescence with high surface areas and electrical conductivity. Compared to the original MOF-74 materials constructed from 2,5-dihydroxy terephthalic acid and the same metal ions Zn2+, Mg2+, Ni2+, Co2+ and Mn2+, we observed a conductivity enhancement of up to six orders of magnitude. Our results point towards the importance of building block design and the careful choice of the embedded MOF topology for obtaining materials with desired properties such as photoluminescence and electrical conductivity.


2000 ◽  
Vol 42 (10-11) ◽  
pp. 371-374 ◽  
Author(s):  
S. Araki ◽  
J. M. González ◽  
E. de Luis ◽  
E. Bécares

The viability of Parascaris equorum eggs was studied in two experimental pilot-scale high-rate algal ponds (HRAPs) working in parallel with 4 and 10 days hydraulic retention time respectively. Semi-permeable bags of cellulose (15000 daltons pore size) were used to study the effect of physico-chemical conditions on the survival of these helminth eggs. Three thousand eggs were used in each bag. Replicates of these bags were submerged for 4 and 10 days in the HRAPs and egg viability was compared with that in control bags submerged in sterile water. After 4 days exposure, 60% reduction in viability was achieved, reaching 90% after 10 days, much higher than the 16% and 25% found in the control bags for 4 and 10 days respectively. Ionic conditions of the HRAP may have been responsible for up to 50–60% of the egg mortality, suggesting that mortality due to the ionic environment could be more important than physical retention and other potential removal factors.


2021 ◽  
Vol 7 (1) ◽  
Author(s):  
Matteo Callegari ◽  
Elena Crotti ◽  
Marco Fusi ◽  
Ramona Marasco ◽  
Elena Gonella ◽  
...  

AbstractThe core gut microbiome of adult honeybee comprises a set of recurring bacterial phylotypes, accompanied by lineage-specific, variable, and less abundant environmental bacterial phylotypes. Several mutual interactions and functional services to the host, including the support provided for growth, hormonal signaling, and behavior, are attributed to the core and lineage-specific taxa. By contrast, the diversity and distribution of the minor environmental phylotypes and fungal members in the gut remain overlooked. In the present study, we hypothesized that the microbial components of forager honeybees (i.e., core bacteria, minor environmental phylotypes, and fungal members) are compartmentalized along the gut portions. The diversity and distribution of such three microbial components were investigated in the context of the physico-chemical conditions of different gut compartments. We observed that changes in the distribution and abundance of microbial components in the gut are consistently compartment-specific for all the three microbial components, indicating that the ecological and physiological interactions among the host and microbiome vary with changing physico-chemical and metabolic conditions of the gut.


2021 ◽  
Author(s):  
Patricia M. Glibert ◽  
Cynthia A. Heil ◽  
Christopher J. Madden ◽  
Stephen P. Kelly

AbstractThe availability of dissolved inorganic and organic nutrients and their transformations along the fresh to marine continuum are being modified by various natural and anthropogenic activities and climate-related changes. Subtropical central and eastern Florida Bay, located at the southern end of the Florida peninsula, is classically considered to have inorganic nutrient conditions that are in higher-than-Redfield ratio proportions, and high levels of organic and chemically-reduced forms of nitrogen. However, salinity, pH and nutrients, both organic and inorganic, change with changes in freshwater flows to the bay. Here, using a time series of water quality and physico-chemical conditions from 2009 to 2019, the impacts of distinct changes in managed flow, drought, El Niño-related increases in precipitation, and intensive storms and hurricanes are explored with respect to changes in water quality and resulting ecosystem effects, with a focus on understanding why picocyanobacterial blooms formed when they did. Drought produced hyper-salinity conditions that were associated with a seagrass die-off. Years later, increases in precipitation resulting from intensive storms and a hurricane were associated with high loads of organic nutrients, and declines in pH, likely due to high organic acid input and decaying organic matter, collectively leading to physiologically favorable conditions for growth of the picocyanobacterium, Synechococcus spp. These conditions, including very high concentrations of NH4+, were likely inhibiting for seagrass recovery and for growth of competing phytoplankton or their grazers. Given projected future climate conditions, and anticipated cycles of drought and intensive storms, the likelihood of future seagrass die-offs and picocyanobacterial blooms is high.


Author(s):  
Andrii Fedyk ◽  
Evgeniy Y. Slobodyanyuk ◽  
Olha Stotska ◽  
Bohdan V. Vashchenko ◽  
Dmitriy Volochnyuk ◽  
...  

1896 ◽  
Vol 59 (353-358) ◽  
pp. 308-312

The present investigation arises from experiments undertaken to determine autographically the varying relations between the magnitude of electrical change and the magnitude of stimulation in nerve under various chemical conditions.


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