scholarly journals A parallel workflow implementation for PEST version 13.6 in high-performance computing for WRF-Hydro version 5.0: a case study over the midwestern United States

2019 ◽  
Vol 12 (8) ◽  
pp. 3523-3539 ◽  
Author(s):  
Jiali Wang ◽  
Cheng Wang ◽  
Vishwas Rao ◽  
Andrew Orr ◽  
Eugene Yan ◽  
...  

Abstract. The Weather Research and Forecasting Hydrological (WRF-Hydro) system is a state-of-the-art numerical model that models the entire hydrological cycle based on physical principles. As with other hydrological models, WRF-Hydro parameterizes many physical processes. Hence, WRF-Hydro needs to be calibrated to optimize its output with respect to observations for the application region. When applied to a relatively large domain, both WRF-Hydro simulations and calibrations require intensive computing resources and are best performed on multimode, multicore high-performance computing (HPC) systems. Typically, each physics-based model requires a calibration process that works specifically with that model and is not transferrable to a different process or model. The parameter estimation tool (PEST) is a flexible and generic calibration tool that can be used in principle to calibrate any of these models. In its existing configuration, however, PEST is not designed to work on the current generation of massively parallel HPC clusters. To address this issue, we ported the parallel PEST to HPCs and adapted it to work with WRF-Hydro. The porting involved writing scripts to modify the workflow for different workload managers and job schedulers, as well as to connect the parallel PEST to WRF-Hydro. To test the operational feasibility and the computational benefits of this first-of-its-kind HPC-enabled parallel PEST, we developed a case study using a flood in the midwestern United States in 2013. Results on a problem involving the calibration of 22 parameters show that on the same computing resources used for parallel WRF-Hydro, the HPC-enabled parallel PEST can speed up the calibration process by a factor of up to 15 compared with commonly used PEST in sequential mode. The speedup factor is expected to be greater with a larger calibration problem (e.g., more parameters to be calibrated or a larger size of study area).

2018 ◽  
Author(s):  
Jiali Wang ◽  
Cheng Wang ◽  
Andrew Orr ◽  
Rao Kotamarthi

Abstract. Surface hydrological models must be calibrated for each application region. The Weather Research and Forecasting Hydrological system (WRF-Hydro) is a state-of-the-art numerical model that models the entire hydrological cycle based on physical principles. However, as with other hydrological models, WRF-Hydro parameterizes many physical processes. As a result, WRF-Hydro needs to be calibrated to optimize its output with respect to observations. However, when applied to a relatively large domain, both WRF-Hydro simulations and calibrations require intensive computing resources and are best performed in parallel. Typically, each physics parameterization requires a calibration process that works specifically with that model, and is not transferrable to a different process or model. Parameter Estimate Tool (PEST) is a flexible and generic calibration tool that can calibrate any numerical code. However, PEST in its current configuration is not designed to work on the current generation of massively parallel high-performance computing (HPC) clusters. This study ported the parallel PEST to HPCs and adapted it to work with the WRF-Hydro. The porting involved writing scripts to modify the workflow for different workload managers and job schedulers, as well as developing code to connect parallel PEST to WRF-Hydro. We developed a case study using a flood in the Midwestern United States in 2013 to test the operational feasibility of the HPC-enabled parallel PEST. We then evaluate the WRF-Hydro performance in water volume and timing of the flood event. We also assess the spatial transferability of the calibrated parameters for the study area. We finally discuss the scale-up capability of the HPC-enabled parallel PEST to provide insight for PEST's application to other hydrological models and earth system models on current and emerging HPC platforms. We find that, for this particular study, the HPC-enabled PEST calibration tool can speed up WRF-Hydro calibration by a factor of 30 compared to commonly-used sequential calibration approaches.


2017 ◽  
Vol 29 (3) ◽  
Author(s):  
Mabule Samuel Mabakane ◽  
Daniel Mojalefa Moeketsi ◽  
Anton Lopis

This paper presents a case study on the scalability of several versions of the molecular dynamics code (DL_POLY) performed on South Africa‘s Centre for High Performance Computing e1350 IBM Linux cluster, Sun system and Lengau supercomputers. Within this study different problem sizes were designed and the same chosen systems were employed in order to test the performance of DL_POLY using weak and strong scalability. It was found that the speed-up results for the small systems were better than large systems on both Ethernet and Infiniband network. However, simulations of large systems in DL_POLY performed well using Infiniband network on Lengau cluster as compared to e1350 and Sun supercomputer.


2021 ◽  
Vol 32 (8) ◽  
pp. 2035-2048
Author(s):  
Mochamad Asri ◽  
Dhairya Malhotra ◽  
Jiajun Wang ◽  
George Biros ◽  
Lizy K. John ◽  
...  

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