scholarly journals Competing Transfer Pathways in Direct and Indirect Dynamic Nuclear Polarization MAS NMR Experiments on HIV-1 Capsid Assemblies: Implications for Sensitivity and Resolution

2021 ◽  
Author(s):  
Ivan V. Sergeyev ◽  
Caitlin M. Quinn ◽  
Jochem Struppe ◽  
Angela Gronenborn ◽  
Tatyana Polenova

Abstract. Dynamic nuclear polarization-enhanced (DNP) magic angle spinning (MAS) NMR of biological systems is a rapidly growing field. Large signal enhancements make the technique particularly attractive for signal-limited cases, such as studies of complex biological assemblies or at natural isotopic abundance. However, spectral resolution is considerably reduced compared to ambient-temperature non-DNP spectra. Herein, we report a systematic investigation into sensitivity and resolution of 1D and 2D 13C-detected DNP MAS NMR experiments on HIV-1 CA tubular assemblies. We show that the magnitude and sign of signal enhancement as well as the homogeneous line width are strongly dependent on the biradical concentration, the dominant polarization transfer pathway, and the enhancement buildup time. Our findings provide guidance for optimal choice of sample preparation and experimental conditions in DNP experiments.

2021 ◽  
Vol 2 (1) ◽  
pp. 239-249
Author(s):  
Ivan V. Sergeyev ◽  
Caitlin M. Quinn ◽  
Jochem Struppe ◽  
Angela M. Gronenborn ◽  
Tatyana Polenova

Abstract. Dynamic nuclear polarization (DNP)-enhanced magic angle spinning (MAS) nuclear magnetic resonance (NMR) of biological systems is a rapidly growing field. Large signal enhancements make the technique particularly attractive for signal-limited cases, such as studies of complex biological assemblies or at natural isotopic abundance. However, spectral resolution is considerably reduced compared to ambient-temperature non-DNP spectra. Herein, we report a systematic investigation into sensitivity and resolution of 1D and 2D 13C-detected DNP MAS NMR experiments on HIV-1 CA capsid protein tubular assemblies. We show that the magnitude and sign of signal enhancement as well as the homogeneous line width are strongly dependent on the biradical concentration, the dominant polarization transfer pathway, and the enhancement buildup time. Our findings provide guidance for optimal choice of sample preparation and experimental conditions in DNP experiments.


2019 ◽  
Vol 141 (14) ◽  
pp. 5681-5691 ◽  
Author(s):  
Manman Lu ◽  
Mingzhang Wang ◽  
Ivan V. Sergeyev ◽  
Caitlin M. Quinn ◽  
Jochem Struppe ◽  
...  

2015 ◽  
Vol 17 (34) ◽  
pp. 21824-21836 ◽  
Author(s):  
Frédéric Mentink-Vigier ◽  
Subhradip Paul ◽  
Daniel Lee ◽  
Akiva Feintuch ◽  
Sabine Hediger ◽  
...  

Biradicals' performance in MAS-DNP experiments should be revised to account for substantial field-dependent nuclear polarization losses that depend on experimental conditions and biradical properties.


2021 ◽  
Vol 119 (1) ◽  
pp. e2114413119
Author(s):  
Salima Bahri ◽  
Robert Silvers ◽  
Brian Michael ◽  
Kristaps Jaudzems ◽  
Daniela Lalli ◽  
...  

Several publications describing high-resolution structures of amyloid-β (Aβ) and other fibrils have demonstrated that magic-angle spinning (MAS) NMR spectroscopy is an ideal tool for studying amyloids at atomic resolution. Nonetheless, MAS NMR suffers from low sensitivity, requiring relatively large amounts of samples and extensive signal acquisition periods, which in turn limits the questions that can be addressed by atomic-level spectroscopic studies. Here, we show that these drawbacks are removed by utilizing two relatively recent additions to the repertoire of MAS NMR experiments—namely, 1H detection and dynamic nuclear polarization (DNP). We show resolved and sensitive two-dimensional (2D) and three-dimensional (3D) correlations obtained on 13C,15N-enriched, and fully protonated samples of M0Aβ1-42 fibrils by high-field 1H-detected NMR at 23.4 T and 18.8 T, and 13C-detected DNP MAS NMR at 18.8 T. These spectra enable nearly complete resonance assignment of the core of M0Aβ1-42 (K16-A42) using submilligram sample quantities, as well as the detection of numerous unambiguous internuclear proximities defining both the structure of the core and the arrangement of the different monomers. An estimate of the sensitivity of the two approaches indicates that the DNP experiments are currently ∼6.5 times more sensitive than 1H detection. These results suggest that 1H detection and DNP may be the spectroscopic approaches of choice for future studies of Aβ and other amyloid systems.


2017 ◽  
Vol 283 ◽  
pp. 71-78 ◽  
Author(s):  
Brice J. Albert ◽  
Seong Ho Pahng ◽  
Nicholas Alaniva ◽  
Erika L. Sesti ◽  
Peter W. Rand ◽  
...  

2016 ◽  
Vol 52 (32) ◽  
pp. 5531-5533 ◽  
Author(s):  
Eric Besson ◽  
Fabio Ziarelli ◽  
Emily Bloch ◽  
Guillaume Gerbaud ◽  
Séverine Queyroy ◽  
...  

Hybrid silica materials with wall-embedded nitroxides efficiently polarize impregnated substrates in high-field dynamic nuclear polarization magic-angle spinning solid-state NMR experiments.


2016 ◽  
Vol 120 (2) ◽  
pp. 329-339 ◽  
Author(s):  
Rupal Gupta ◽  
Manman Lu ◽  
Guangjin Hou ◽  
Marc A. Caporini ◽  
Melanie Rosay ◽  
...  

2017 ◽  
Vol 121 (42) ◽  
pp. 23847-23847
Author(s):  
Markus M. Hoffmann ◽  
Sarah Bothe ◽  
Torsten Gutmann ◽  
Frank-Frederik Hartmann ◽  
Michael Reggelin ◽  
...  

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