scholarly journals Ordering of trajectories reveals hierarchical finite-time coherent sets in Lagrangian particle data: detecting Agulhas rings in the South Atlantic Ocean

2020 ◽  
Author(s):  
David Wichmann ◽  
Christian Kehl ◽  
Henk A. Dijkstra ◽  
Erik van Sebille

Abstract. The detection of finite-time coherent particle sets in Lagrangian trajectory data using data clustering techniques is an active research field at the moment. Yet, the clustering methods mostly employed so far have been based on graph partitioning, which assigns each trajectory to a cluster, i.e. there is no concept of noisy, incoherent trajectories. This is problematic for applications to the ocean, where many small coherent eddies are present in a large fluid domain. In addition, to our knowledge none of the existing methods to detect finite-time coherent sets has an intrinsic notion of coherence hierarchy, i.e. the detection of finite-time coherent sets at different spatial scales. Such coherence hierarchies are present in the ocean, where basin scale coherence coexists with smaller coherent structures such as jets and mesoscale eddies. Here, for the first time in this context, we use the density-based clustering algorithm OPTICS (Ankerst et al., 1999) to detect finite-time coherent particle sets in Lagrangian trajectory data. Different from partition based clustering methods, OPTICS does not require to fix the number of clusters beforehand. Derived clustering results contain a concept of noise, such that not every trajectory needs to be part of a cluster. OPTICS also has a major advantage compared to the previously used DBSCAN method, as it can detect clusters of varying density. Further, clusters can also be detected based on density changes instead of absolute density. Finally, OPTICS based clusters have an intrinsically hierarchical structure, which allows to detect coherent trajectory sets at different spatial scales at once. We apply OPTICS directly to Lagrangian trajectory data in the Bickley jet model flow and successfully detect the expected vortices and the jet. The resulting clustering separates the vortices and the jet from background noise, with an imprint of the hierarchical clustering structure of coherent, small scale vortices in a coherent, large-scale, background flow. We then apply our method to a set of virtual trajectories released in the eastern South Atlantic Ocean in an eddying ocean model and successfully detect Agulhas rings. At larger scale, our method also separates the eastward and westward moving parts of the subtropical gyre. We illustrate the difference between our approach and partition based k-Means clustering using a 2-dimensional embedding of the trajectories derived from classical multidimensional scaling. We also show how OPTICS can be applied to the spectral embedding of a trajectory based network to overcome the problems of k-Means spectral clustering in detecting Agulhas rings.

2021 ◽  
Vol 28 (1) ◽  
pp. 43-59
Author(s):  
David Wichmann ◽  
Christian Kehl ◽  
Henk A. Dijkstra ◽  
Erik van Sebille

Abstract. The detection of finite-time coherent particle sets in Lagrangian trajectory data, using data-clustering techniques, is an active research field at the moment. Yet, the clustering methods mostly employed so far have been based on graph partitioning, which assigns each trajectory to a cluster, i.e. there is no concept of noisy, incoherent trajectories. This is problematic for applications in the ocean, where many small, coherent eddies are present in a large, mostly noisy fluid flow. Here, for the first time in this context, we use the density-based clustering algorithm of OPTICS (ordering points to identify the clustering structure; Ankerst et al., 1999) to detect finite-time coherent particle sets in Lagrangian trajectory data. Different from partition-based clustering methods, derived clustering results contain a concept of noise, such that not every trajectory needs to be part of a cluster. OPTICS also has a major advantage compared to the previously used density-based spatial clustering of applications with noise (DBSCAN) method, as it can detect clusters of varying density. The resulting clusters have an intrinsically hierarchical structure, which allows one to detect coherent trajectory sets at different spatial scales at once. We apply OPTICS directly to Lagrangian trajectory data in the Bickley jet model flow and successfully detect the expected vortices and the jet. The resulting clustering separates the vortices and the jet from background noise, with an imprint of the hierarchical clustering structure of coherent, small-scale vortices in a coherent, large-scale background flow. We then apply our method to a set of virtual trajectories released in the eastern South Atlantic Ocean in an eddying ocean model and successfully detect Agulhas rings. We illustrate the difference between our approach and partition-based k-means clustering using a 2D embedding of the trajectories derived from classical multidimensional scaling. We also show how OPTICS can be applied to the spectral embedding of a trajectory-based network to overcome the problems of k-means spectral clustering in detecting Agulhas rings.


Ocean Science ◽  
2017 ◽  
Vol 13 (4) ◽  
pp. 521-530 ◽  
Author(s):  
Wenjun Yao ◽  
Jiuxin Shi ◽  
Xiaolong Zhao

Abstract. Basin-scale freshening of Antarctic Intermediate Water (AAIW) is reported to have occurred in the South Atlantic Ocean during the period from 2005 to 2014, as shown by the gridded monthly means of the Array for Real-time Geostrophic Oceanography (Argo) data. This phenomenon was also revealed by two repeated transects along a section at 30° S, performed during the World Ocean Circulation Experiment Hydrographic Program. Freshening of the AAIW was compensated for by a salinity increase of thermocline water, indicating a hydrological cycle intensification. This was supported by the precipitation-minus-evaporation change in the Southern Hemisphere from 2000 to 2014. Freshwater input from atmosphere to ocean surface increased in the subpolar high-precipitation region and vice versa in the subtropical high-evaporation region. Against the background of hydrological cycle changes, a decrease in the transport of Agulhas Leakage (AL), which was revealed by the simulated velocity field, was proposed to be a contributor to the associated freshening of AAIW. Further calculation showed that such a decrease could account for approximately 53 % of the observed freshening (mean salinity reduction of about 0.012 over the AAIW layer). The estimated variability of AL was inferred from a weakening of wind stress over the South Indian Ocean since the beginning of the 2000s, which would facilitate freshwater input from the source region. The mechanical analysis of wind data here was qualitative, but it is contended that this study would be helpful to validate and test predictably coupled sea–air model simulations.


2012 ◽  
Vol 57 (4) ◽  
pp. 989-1010 ◽  
Author(s):  
Abigail E. Noble ◽  
Carl H. Lamborg ◽  
Dan C. Ohnemus ◽  
Phoebe J. Lam ◽  
Tyler J. Goepfert ◽  
...  

2018 ◽  
Author(s):  
Maria P. Dias ◽  
Steffen Oppel

The Convention on Biological Diversity aspires to designate 10% of the global oceans as Marine Protected Areas (MPAs), but so far, few MPAs protect pelagic species in the high seas. Transparent scientific approaches are needed to ensure that these encompass areas with high biodiversity value. Here we used the distribution of all globally threatened seabirds breeding in a centrally located archipelago (Tristan da Cunha) to provide guidance on where MPAs could be established in the South Atlantic Ocean. We combined year-round tracking data from six species, and used the systematic conservation-planning tool, ‘Zonation’, to delineate areas that would protect the largest proportion of each population. The areas used most intensively varied among species and seasons. Combining the sites used by all six species suggested that the most important areas of the South Atlantic are located south of South Africa, around the central South Atlantic between 30°S and 55°S, and near South America. We estimated that the longline fishing effort in these intensively used areas is around 11 million hooks on average each year, highlighting the need for improved monitoring of seabird bycatch rates and the enforcement of compliance with bird bycatch mitigation requirements by fisheries. There was no overlap between the identified areas and any of the existing MPAs in the South Atlantic. The conservation of these highly mobile, pelagic species cannot be achieved by single countries, but requires a multi-national approach at an ocean-basin scale, such as an agreement for the conservation of biodiversity beyond national jurisdiction under the United Nation Convention on the Law of the Sea.


Polar Biology ◽  
2020 ◽  
Author(s):  
Alexander L. Bond ◽  
Christopher Taylor ◽  
David Kinchin-Smith ◽  
Derren Fox ◽  
Emma Witcutt ◽  
...  

AbstractAlbatrosses and other seabirds are generally highly philopatric, returning to natal colonies when they achieve breeding age. This is not universal, however, and cases of extraordinary vagrancy are rare. The Tristan Albatross (Diomedea dabbenena) breeds on Gough Island in the South Atlantic Ocean, with a small population on Inaccessible Island, Tristan da Cunha, ca 380 km away. In 2015, we observed an adult male albatross in Gonydale, Gough Island, which had been ringed on Ile de la Possession, Crozet Islands in 2009 when it was assumed to be an immature Wandering Albatross (D. exulans). We sequenced 1109 bp of the cytochrome b mitochondrial gene from this bird, and confirmed it to be a Tristan Albatross, meaning its presence on Crozet 6 years previous, and nearly 5000 km away, was a case of prospecting behaviour in a heterospecific colony. Given the challenges in identifying immature Diomedea albatrosses, such dispersal events may be more common than thought previously.


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