scholarly journals Author response: Cell type-specific long-range connections of basal forebrain circuit

Author(s):  
Johnny Phong Do ◽  
Min Xu ◽  
Seung-Hee Lee ◽  
Wei-Cheng Chang ◽  
Siyu Zhang ◽  
...  
eLife ◽  
2016 ◽  
Vol 5 ◽  
Author(s):  
Johnny Phong Do ◽  
Min Xu ◽  
Seung-Hee Lee ◽  
Wei-Cheng Chang ◽  
Siyu Zhang ◽  
...  

eLife ◽  
2016 ◽  
Vol 5 ◽  
Author(s):  
Johnny Phong Do ◽  
Min Xu ◽  
Seung-Hee Lee ◽  
Wei-Cheng Chang ◽  
Siyu Zhang ◽  
...  

The basal forebrain (BF) plays key roles in multiple brain functions, including sleep-wake regulation, attention, and learning/memory, but the long-range connections mediating these functions remain poorly characterized. Here we performed whole-brain mapping of both inputs and outputs of four BF cell types – cholinergic, glutamatergic, and parvalbumin-positive (PV+) and somatostatin-positive (SOM+) GABAergic neurons – in the mouse brain. Using rabies virus -mediated monosynaptic retrograde tracing to label the inputs and adeno-associated virus to trace axonal projections, we identified numerous brain areas connected to the BF. The inputs to different cell types were qualitatively similar, but the output projections showed marked differences. The connections to glutamatergic and SOM+ neurons were strongly reciprocal, while those to cholinergic and PV+ neurons were more unidirectional. These results reveal the long-range wiring diagram of the BF circuit with highly convergent inputs and divergent outputs and point to both functional commonality and specialization of different BF cell types.


2015 ◽  
Author(s):  
Jean-Philippe Fortin ◽  
Kasper D Hansen

Analysis of Hi-C data has shown that the genome can be divided into two compartments called A/B compartments. These compartments are cell-type specific and are associated with open and closed chromatin. We show that A/B compartments can be reliably estimated using epigenetic data from several different platforms, the Illumina 450k DNA methylation microarray, DNase hypersensitivity sequencing, single-cell ATAC sequencing and single-cell whole-genome bisulfite sequencing. We do this by exploiting the fact that the structure of long range correlations differs between open and closed compartments. This work makes A/B compartments readily available in a wide variety of cell types, including many human cancers.


2013 ◽  
Author(s):  
Alexander M Herman ◽  
Longwen Huang ◽  
Dona K Murphey ◽  
Isabella Garcia ◽  
Benjamin R Arenkiel

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