scholarly journals Author response: Mapping cell type-specific transcriptional enhancers using high affinity, lineage-specific Ep300 bioChIP-seq

2017 ◽  
Author(s):  
Pingzhu Zhou ◽  
Fei Gu ◽  
Lina Zhang ◽  
Brynn N Akerberg ◽  
Qing Ma ◽  
...  
2013 ◽  
Author(s):  
Alexander M Herman ◽  
Longwen Huang ◽  
Dona K Murphey ◽  
Isabella Garcia ◽  
Benjamin R Arenkiel

Author(s):  
Johnny Phong Do ◽  
Min Xu ◽  
Seung-Hee Lee ◽  
Wei-Cheng Chang ◽  
Siyu Zhang ◽  
...  

1993 ◽  
Vol 13 (4) ◽  
pp. 2182-2192
Author(s):  
C Perez ◽  
J Wietzerbin ◽  
P D Benech

The human high-affinity receptor for the constant region of immunoglobulin G (human Fc gamma R1) is encoded by two mRNAs induced selectively by gamma interferon (IFN-gamma) and expressed in cells of myeloid lineage. The cis-DNA element (GRR) previously found to confer IFN-gamma responsiveness to this gene acts as an inducible enhancer and is the target of an IFN-gamma-activated factor(s) (GIRE-BP) in cells of different origins. Although the GRR motif is not related to the DNA elements involved in the regulation of other IFN-stimulated genes, GIRE-BP binding depends on the IFN-gamma-dependent activation of the 91-kDa protein known to be one of the factors of a transcriptional complex activated by IFN-alpha. Deletions of the Fc gamma R1 promoter allowed us to identify a 25-bp element, downstream from the GRR motif, conferring cell-type-specific expression. This element, called MATE (myeloid activating transcription element), is the DNA target for constitutive factors forming two complexes, MATE-BP1 and MATE-BP2. In accordance with the functional analysis, MATE-BP binding activities were detected in extracts prepared from myeloid cell lines such as THP-1, HL-60, and U-937 but not in HeLa cell extracts. The MATE motif is present not only in the promoter of other Fc receptor genes but also in several promoters of genes whose expression is restricted to monocytic cells. Our results suggest that human Fc gamma R1 gene expression in myeloid cells is initiated by the interaction of IFN-gamma-activated factors with cell-type-specific factors through their binding to the GRR and MATE motifs.


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