Improved chromosome-level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) integrating Pacific Biosciences long reads and a high-density linkage map

Background The Glanville fritillary (Melitaea cinxia) butterfly is a model system for metapopulation dynamics research in fragmented landscapes. Here, we provide a chromosome-level assembly of the butterfly's genome produced from Pacific Biosciences sequencing of a pool of males, combined with a linkage map from population crosses. Results The final assembly size of 484 Mb is an increase of 94 Mb on the previously published genome. Estimation of the completeness of the genome with BUSCO indicates that the genome contains 92–94% of the BUSCO genes in complete and single copies. We predicted 14,810 genes using the MAKER pipeline and manually curated 1,232 of these gene models. Conclusions The genome and its annotated gene models are a valuable resource for future comparative genomics, molecular biology, transcriptome, and genetics studies on this species.

Dispersal of aquatic invertebrates by lesser black-backed gulls and white storks within and between inland habitats

Waterbirds can transport aquatic invertebrates internally, contributing to metapopulation dynamics between aquatic habitats in a terrestrial matrix. However, research into this dispersal process to date has focused on individual field sites or laboratory studies. We investigated the invertebrates dispersed by endozoochory by the lesser black-backed gull Larus fuscus wintering in Andalusia, south-west Spain in 2016–2017, comparing seven sites interconnected by their movements, with different degrees of anthropogenization [three landfills, two saltpan complexes, a natural lake, and a large (370 km2) ricefield area]. In the ricefields, we also compared invertebrates dispersed by gulls with those dispersed by the larger white stork Ciconia ciconia. A total of 642 intact invertebrates and their propagules (mainly plumatellid bryozoans, cladocerans, and other branchiopods) were recorded in excreta (faeces and pellets) from gulls and storks. A greater diversity and abundance of invertebrates were recorded in ricefields, notably 43 individuals of the alien snail Physella acuta. One snail was still alive in a gull pellet 3 weeks after being stored in a fridge. This represents the first record of snail dispersal within waterbird pellets. Viability was also confirmed for the cladoceran Macrothrix rosea recorded in ricefields, and the alien brine shrimp Artemia franciscana recorded mainly in saltpans. In ricefields, gulls and pellets had significantly fewer propagules and fewer taxa per gram of excreta than storks and faeces, respectively. Through their high mobility, gulls and storks can disperse invertebrates between different natural and artificial habitats, and even to landfills. They can promote metapopulation dynamics for native bryozoans and branchiopods, but also the spread of invasive snails and brine shrimp.

Forest management affects seasonal source-sink dynamics in a territorial, group-living bird

The persistence of wildlife populations is under threat as a consequence of human activities, which are degrading natural ecosystems. Commercial forestry is the greatest threat to biodiversity in boreal forests. Forestry practices have degraded most available habitat, threatening the persistence of natural populations. Understanding population responses is, therefore, critical for their conservation. Population viability analyses are effective tools to predict population persistence under forestry management. However, quantifying the mechanisms driving population responses is complex as population dynamics vary temporally and spatially. Metapopulation dynamics are governed by local dynamics and spatial factors, potentially mediating the impacts of forestry e.g., through dispersal. Here, we performed a seasonal, spatially explicit population viability analysis, using long-term data from a group-living territorial bird (Siberian jay, Perisoreus infaustus). We quantified the effects of forest management on metapopulation dynamics, via forest type-specific demography and spatially explicit dispersal, and how forestry impacted the stability of metapopulation dynamics. Forestry reduced metapopulation growth and stability, through negative effects on reproduction and survival. Territories in higher quality natural forest contributed more to metapopulation dynamics than managed forests, largely through demographic processes rather than dispersal. Metapopulation dynamics in managed forest were also less resilient to disturbances and consequently, may be more vulnerable to environmental change. Seasonal differences in source-sink dynamics observed in managed forest, but not natural forests, were caused by associated seasonal differences in dispersal. As shown here, capturing seasonal source-sink dynamics allows us to predict population persistence under human disturbance and to provide targeted conservation recommendations.