Hexose phosphate is an important carbon source within the cytoplasm of host cells. Bacterial pathogens that invade, survive, and multiply within various host epithelial cells exploit hexose phosphates from the host cytoplasm through thehexosephosphatetransport (HPT) system to gain energy and synthesize cellular components. InEscherichia coli, the HPT system consists of a two-component regulatory system (UhpAB) and a phosphate sensor protein (UhpC) that tightly regulate expression of a hexose phosphate transporter (UhpT). Although growing evidence suggests thatStaphylococcus aureusalso can invade, survive, and multiply within various host epithelial cells, the genetic elements involved in the HPT system inS. aureushave not been characterized yet. In this study, we identified and characterized the HPT system inS. aureusthat includes thehptRS(a novel two-component regulatory system), thehptA(a putative phosphate sensor), and theuhpT(a hexose phosphate transporter) genes. ThehptA,hptRS, anduhpTmarkerless deletion mutants were generated by an allelic replacement method using a modified pMAD-CM-GFPuv vector system. We demonstrated that bothhptAandhptRSare required to positively regulate transcription ofuhpTin response to extracellular phosphates, such as glycerol-3-phosphate (G3P), glucose-6-phosphate (G6P), and fosfomycin. Mutational studies revealed that disruption of thehptA,hptRS, oruhpTgene impaired the growth of bacteria when the available carbon source was limited to G6P, impaired survival/multiplication within various types of host cells, and increased resistance to fosfomycin. The results of this study suggest that the HPT system plays an important role in adaptation ofS. aureuswithin the host cells and could be an important target for developing novel antistaphylococcal therapies.