The 100,000–77,000-Year Old Middle Stone Age Micromammal Sequence from Blombos Cave, South Africa: Local Climatic Stability or a Tale of Predator Bias?

In this paper, we present a case study of the micromammal sequence from Marine Isotope Stage 5 (130,000–71,000 YBP) at Blombos Cave on the southern Cape coast of South Africa. Our analyses of the micromammal assemblage from 100,000 to 76,000 YBP shed light on micromammal taxonomic distributions, local palaeoenvironments, and site formation processes at this renowned Middle Stone Age site. Taphonomic analyses indicate that spotted eagle owls (Bubo africanus) were the main predator species responsible for accumulating the micromammals, but with contributions from barn owls (Tyto alba). In addition, the micromammal bones have been subjected to a range of post-depositional processes, some of which are associated with microbial actions likely resulting from human or animal activities in the cave. We have recorded three species in the archaeological assemblage that do not occur in the Blombos area today. These are the Hottentot golden mole (Amblysomus hottentotus), Duthie’s golden mole (Chlorotalpa duthieae), and Laminate vlei rat (Otomys laminatus). The biodiversity indices based on micromammal species suggest that local vegetation consisted of different habitats that could sustain a diverse small mammal population. During MIS 5c/5b, the diversity of species declined, but there was still a mosaic of vegetation habitats present in the local area. On a larger temporal scale, climate conditions were slightly more humid than at present, and winter rainfall was seemingly greater. The amount of winter rainfall would have been similar to locations currently c. 50–150 km further west of Blombos Cave. However, based on micromammal proxies, there were seemingly no major fluctuations visible in climate or vegetation composition during the entire 24,000-year period. We suggest that the explanation could be multifaceted, two potential factors being predator bias derived from the owls’ preference for generalist micromammal species or an actual reflection of local stable climatic and environmental conditions in the Blombos area.

Pleistocene golden mole and sand-swimming trace fossils from the Cape coast of South Africa

More than 250 Pleistocene vertebrate trace fossil sites have been identified on the Cape south coast of South Africa in aeolianites and cemented foreshore deposits. These discoveries, representing the epifaunal tracks of animals that moved over these sand substrates, complement traditional body fossil studies, and contribute to palaeo-environmental reconstruction. Not described in detail until now, but also important faunal components, are the infaunal traces of animals that moved within these sandy substrates. Six golden mole burrow trace sites (Family Chrysochloridae) have been identified on the Cape south coast. In addition, three sites, including one on the Cape southeast coast, have been identified that show evidence of sand-swimming, probably by a golden mole with a means of locomotion similar to that of the extant Eremitalpa genus. Such traces have not been described in detail in the global ichnology record, and merit the erection of a new ichnogenus Natatorichnus, with two ichnospecies, N. subarenosa ichnosp. nov and N. sulcatus ichnosp. nov. Care is required in the identification of such traces, and the orientation of the trace fossil surface needs to be determined, to avoid confusion with hatchling turtle tracks. Substantial regional Pleistocene dune environments are inferred from these sand-swimming traces.

The dopamine receptor D5 gene shows signs of independent erosion in toothed and baleen whales

To compare gene loci considering a phylogenetic framework is a promising approach to uncover the genetic basis of human diseases. Imbalance of dopaminergic systems is suspected to underlie some emerging neurological disorders. The physiological functions of dopamine are transduced via G-protein-coupled receptors, including DRD5 which displays a relatively higher affinity toward dopamine. Importantly, DRD5 knockout mice are hypertense, a condition emerging from an increase in sympathetic tone. We investigated the evolution of DRD5, a high affinity receptor for dopamine, in mammals. Surprisingly, among 124 investigated mammalian genomes, we found that Cetacea lineages (Mysticeti and Odontoceti) have independently lost this gene, as well as the burrowing Chrysochloris asiatica (Cape golden mole). We suggest that DRD5 inactivation parallels hypoxia-induced adaptations, such as peripheral vasoconstriction required for deep-diving in Cetacea, in accordance with the convergent evolution of vasoconstrictor genes in hypoxia-exposed animals. Our findings indicate that Cetacea are natural knockouts for DRD5 and might offer valuable insights into the mechanisms of some forms of vasoconstriction responses and hypertension in humans.

The dopamine receptor D5 gene shows signs of independent erosion in Toothed and Baleen whales

To compare gene loci considering a phylogenetic framework is a promising approach to uncover the genetic basis of human diseases. Imbalance of dopaminergic systems is suspected to underlie some emerging neurological disorders. The physiological functions of dopamine are transduced via G-protein-coupled receptors, including DRD5 which displays a relatively higher affinity towards dopamine. Importantly, DRD5 knockout mice are hypertense, a condition emerging from an increase in sympathetic tone. We investigated the evolution of DRD5, a high affinity receptor for dopamine, in mammals. Surprisingly, among 124 investigated mammalian genomes, we found that Cetacea lineages (Mysticeti and Odontoceti) have independently lost this gene, as well as the burrowing Chrysochloris asiatica (Cape golden mole). We suggest that DRD5 inactivation parallels hypoxia-induced adaptations, such as peripheral vasoconstriction required for deep-diving in Cetacea, in accordance with the convergent evolution of vasoconstrictor genes in hypoxia-exposed animals. Our findings indicate that Cetacea are natural knockouts for DRD5 and might offer valuable insights into the mechanisms of some forms of vasoconstriction responses and hypertension in humans.

The Pleistocene fauna of the Cape south coast revealed through ichnology at two localities

East of Still Bay on the Cape south coast of South Africa lies a rugged, remote stretch of sea cliffs that expose Late Pleistocene aeolianites. A zone of dense concentration of fossil tracks occurs within this area. Two large rocks, which we call Roberts Rock and Megafauna Rock, were identified ~400 metres apart. These rocks contained a variety of trackways, individual tracks, burrow traces and invertebrate trace fossils on multiple bedding planes. Both rocks were found ex situ, but their context could be determined. Roberts Rock has subsequently slid into the ocean, and Megafauna Rock lies at the base of a coastal cliff. Probable trackmakers include elephant, long-horned buffalo, giant Cape horse, rhinoceros, medium and small artiodactyls, golden mole, birds and invertebrates. Dating studies at an adjacent site, which is comparable to the stratigraphy described here, indicate that both rocks were most likely deposited in Marine Isotope Stage 5e (~128–116 ka). Analysis and description of these tracksites confirms the potential of ichnology to complement the skeletal fossil record and to enhance the understanding of Pleistocene life in southern Africa. The ephemeral nature of such tracksites makes repeated visits to this coastline desirable, both to monitor the fate of known sites and to search for newly exposed trace fossil surfaces. Significance: • Roberts Rock and Megafauna Rock are two remarkable fossil tracksites on the Cape south coast, which contain tracks of four members of the Late Pleistocene megafauna. They provide a glimpse of Pleistocene dune life and suggest an area teeming with large mammals. • These tracks were made on dune surfaces near an interface between the grassland of the Palaeo-Agulhas Plain and the inland Fynbos–Strandveld–Renosterveld. Faunal assemblages from both vegetation zones might therefore be recorded. • The trace fossil record and body fossil record both have inherent biases, but have the potential to independently provide complementary information on palaeofaunal composition. • The two rocks have provided the first South African records of fossil elephant tracks (as first described by Dave Roberts and colleagues in 2008), the first rhinoceros track and the first extinct giant Cape horse track, and track evidence of the extinct long-horned buffalo. • Roberts Rock has slumped into the ocean, and it provides an example of the fate of many exposed tracksites. Conversely, new sites frequently become exposed. This scenario stresses the need for regular ichnological surveys along this track-rich coastline to monitor existing sites and to search for new sites.

Habitat associations of small mammals in the foothills of the Drakensberg Mountains, South Africa

Mountains provide important habitats for many species and often have high levels of biodiversity and endemism. Habitat associations of terrestrial small mammals were investigated at Wakefield Farm at the foothills of the Drakensberg Mountains, South Africa from July 2015 to January 2016. Sherman live traps were used to capture small mammals on 35 grids in six different habitats. A total of 472 individuals, from 14 species, were recorded, comprising: 10 rodents, three shrews and one golden mole. Species diversity differed across habitats and seasons. The riparian habitat had the highest species richness, diversity and abundance of small mammals. Species composition also differed across habitats with the indigenous forest and rocky outcrops supporting the most distinct assemblages.