A New Species of Freshwater Amphipods Echinogammarus (Amphipoda, Gammaridae) from Algeria

Several samples of amphipods were obtained from six stations in the upper reach of the Youkous Stream, near Hammamet. This study describes a new species, Echinogammarus monodi n.sp., differing from other Echinogammarus species in the length of the first antenna, the setation of the third article of the mandibular palp (bearing three rows of A-setae and two rows of B-setae), the merus and carpus of pereopods 5 with long setae only, and the exopodite of uropod 3 with numerous groups of long simple setae. A full description of the new species and information about its distribution is given in this paper.

Widespread Torix Rickettsia in New Zealand amphipods and the use of blocking primers to rescue host COI sequences

Endosymbionts and intracellular parasites are common in arthropod hosts. As a consequence, (co)amplification of untargeted bacterial sequences has been occasionally reported as a common problem in DNA barcoding. While identifying amphipod species with universal COI primers, we unexpectedly detected rickettsial endosymbionts belonging to the Torix group. To map the distribution and diversity of Rickettsia species among amphipod hosts, we conducted a nationwide molecular screening of seven families of New Zealand freshwater amphipods. In addition to uncovering a diversity of Torix Rickettsia species across multiple amphipod populations from three different families, our research indicates that: (1) detecting Torix Rickettsia with universal primers is not uncommon, (2) obtaining ‘Rickettsia COI sequences’ from many host individuals is highly likely when a population is infected, and (3) obtaining ‘host COI’ may not be possible with a conventional PCR if an individual is infected. Because Rickettsia COI is highly conserved across diverse host taxa, we were able to design blocking primers that can be used in a wide range of host species infected with Torix Rickettsia. We propose the use of blocking primers to circumvent problems caused by unwanted amplification of Rickettsia and to obtain targeted host COI sequences for DNA barcoding, population genetics, and phylogeographic studies.